| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is gltT [H]
Identifier: 167623533
GI number: 167623533
Start: 1920946
End: 1922271
Strand: Reverse
Name: gltT [H]
Synonym: Shal_1602
Alternate gene names: 167623533
Gene position: 1922271-1920946 (Counterclockwise)
Preceding gene: 167623535
Following gene: 167623523
Centisome position: 36.78
GC content: 45.55
Gene sequence:
>1326_bases ATGTCTGCTACGAAAACCAAAAAACTCGGTCTCACGAGTAAGATTATAATCGGTATGTTTACCGGTATTATTCTTGGACT CTTATTACGCAATCTGTTTCCAGAGAGTGACTTTGTCAAAGAGTACATCAGCGAGGGTGTGCTAAATGTAATCGGTACTA TCTTTATCTCAAGCTTAAAAATGCTTGTTGTTCCTCTTGTCTTTGTTTCACTAGTCTGCGGTACTTGTTCGCTAAGTGAA CCCTCTAAAGTGGGCCGTTTAGGCGGCAAAACCATCGCGTTTTACCTGTTTACGACTGCAATTGCACTTTCAATGGCGAT TCTTGTTGCCATTGCGGTTCACCCTGGTAATGCCAGCATGGTGACTGAGGGCATGCAGTTTGACGTCAAGCAGGCGCCAA GCCTTTCTGATGTACTGATTAACCTTGTCCCGACTAACCCACTGCATGCGATGAGTGAAGGTAATATGCTGCAGATCATC ATATTTGCAGTAATCTTCGGTTTTGCTATCTCACATATTGGCGAGCGCGGTGCACGCGTTGCAGCGTTGTTTAACGACCT TAACGAAGTGATCATGCGTGTTGTTACACTGATCATGCAGCTTGCTCCATACGGTGTGTTCGCCCTAATGGCAAAACTTG CACTCACACTGGGGATGGAAACCTTTGGTAGTGTGGTCAAATACTTCTTCGTTGTACTTGGCGTCTTGTTGATCCATGCA TTTGTTGTTTACCCAACGTTGCTTAAAGTGTTTTCAGGACTTAACCCGTTGACTTTTATTCGCAAAATTCGCGACGTACA ACTATTTGCATTCAGCACGGCCAGCTCAAACGCCACATTGCCAGTGACCATTGAAACTGCTGAACACCGTATGGGCGTTG ATAATAAGATTGCTTCTTTTACCTTGCCACTGGGTGCAACCATTAACATGGATGGCACGGCAATTATGCAAGGCGTCGCA ACCGTATTTATTGCCCAAGTATTTGGTATCGAACTAACCATTACCGATTACGCCATGGTTGTTGTGACCGCAACGCTTGC CTCTATCGGTACGGCGGGTGTACCCGGTGTGGGTCTTATCATGTTAGCCATGGTACTAAACCAAGTTGGCTTGCCTGTTG AAGGTATCGCGCTAATTATTGGTGTGGATAGACTACTTGATATGGTGCGCACCGCAGTTAACGTGACTGGCGATACGGTC GCAACAGTGGTGATTGCTAAATCTGAGAATGAGTTTAATGAAGCGGTATTTAATGACACCCAAGCAGGTAAAGTCGCTCC AGGCTTTAACGCTCAGGTACACGCTGAAGAGAATAAACTGAGCTAA
Upstream 100 bases:
>100_bases TCAATCAAAACTTTAACTTCTACACCATTTCCTCGGTGACACTTTCTTGTTAGGCTTTATGACGCAAATTGAAAAGCATA AAAATTATACAGGAAGCACT
Downstream 100 bases:
>100_bases TTTTCATAGCTAAAATGGCTCATTAAGCGAGCAACGCACTGGCTTTAAGAGCTGCATGAATAAAAAGGCATCCAGTTGGA TGCCTTTTTTGTACTAAATT
Product: sodium:dicarboxylate symporter
Products: L-aspartate [Cytoplasm]; Proton [Cytoplasm]; L-glutamate [Cytoplasm] [C]
Alternate protein names: Glutamate-aspartate carrier protein [H]
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MSATKTKKLGLTSKIIIGMFTGIILGLLLRNLFPESDFVKEYISEGVLNVIGTIFISSLKMLVVPLVFVSLVCGTCSLSE PSKVGRLGGKTIAFYLFTTAIALSMAILVAIAVHPGNASMVTEGMQFDVKQAPSLSDVLINLVPTNPLHAMSEGNMLQII IFAVIFGFAISHIGERGARVAALFNDLNEVIMRVVTLIMQLAPYGVFALMAKLALTLGMETFGSVVKYFFVVLGVLLIHA FVVYPTLLKVFSGLNPLTFIRKIRDVQLFAFSTASSNATLPVTIETAEHRMGVDNKIASFTLPLGATINMDGTAIMQGVA TVFIAQVFGIELTITDYAMVVVTATLASIGTAGVPGVGLIMLAMVLNQVGLPVEGIALIIGVDRLLDMVRTAVNVTGDTV ATVVIAKSENEFNEAVFNDTQAGKVAPGFNAQVHAEENKLS
Sequences:
>Translated_441_residues MSATKTKKLGLTSKIIIGMFTGIILGLLLRNLFPESDFVKEYISEGVLNVIGTIFISSLKMLVVPLVFVSLVCGTCSLSE PSKVGRLGGKTIAFYLFTTAIALSMAILVAIAVHPGNASMVTEGMQFDVKQAPSLSDVLINLVPTNPLHAMSEGNMLQII IFAVIFGFAISHIGERGARVAALFNDLNEVIMRVVTLIMQLAPYGVFALMAKLALTLGMETFGSVVKYFFVVLGVLLIHA FVVYPTLLKVFSGLNPLTFIRKIRDVQLFAFSTASSNATLPVTIETAEHRMGVDNKIASFTLPLGATINMDGTAIMQGVA TVFIAQVFGIELTITDYAMVVVTATLASIGTAGVPGVGLIMLAMVLNQVGLPVEGIALIIGVDRLLDMVRTAVNVTGDTV ATVVIAKSENEFNEAVFNDTQAGKVAPGFNAQVHAEENKLS >Mature_440_residues SATKTKKLGLTSKIIIGMFTGIILGLLLRNLFPESDFVKEYISEGVLNVIGTIFISSLKMLVVPLVFVSLVCGTCSLSEP SKVGRLGGKTIAFYLFTTAIALSMAILVAIAVHPGNASMVTEGMQFDVKQAPSLSDVLINLVPTNPLHAMSEGNMLQIII FAVIFGFAISHIGERGARVAALFNDLNEVIMRVVTLIMQLAPYGVFALMAKLALTLGMETFGSVVKYFFVVLGVLLIHAF VVYPTLLKVFSGLNPLTFIRKIRDVQLFAFSTASSNATLPVTIETAEHRMGVDNKIASFTLPLGATINMDGTAIMQGVAT VFIAQVFGIELTITDYAMVVVTATLASIGTAGVPGVGLIMLAMVLNQVGLPVEGIALIIGVDRLLDMVRTAVNVTGDTVA TVVIAKSENEFNEAVFNDTQAGKVAPGFNAQVHAEENKLS
Specific function: This carrier protein is part of the Na(+)-dependent, binding-protein-independent glutamate-aspartate transport system [H]
COG id: COG1301
COG function: function code C; Na+/H+-dicarboxylate symporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]
Homologues:
Organism=Homo sapiens, GI169790839, Length=443, Percent_Identity=34.0857787810384, Blast_Score=215, Evalue=7e-56, Organism=Homo sapiens, GI40254478, Length=505, Percent_Identity=30.8910891089109, Blast_Score=199, Evalue=3e-51, Organism=Homo sapiens, GI66773030, Length=400, Percent_Identity=33.75, Blast_Score=198, Evalue=7e-51, Organism=Homo sapiens, GI21314632, Length=414, Percent_Identity=32.6086956521739, Blast_Score=195, Evalue=7e-50, Organism=Homo sapiens, GI4827012, Length=334, Percent_Identity=37.7245508982036, Blast_Score=189, Evalue=5e-48, Organism=Homo sapiens, GI5032093, Length=375, Percent_Identity=35.7333333333333, Blast_Score=187, Evalue=2e-47, Organism=Homo sapiens, GI194239697, Length=292, Percent_Identity=38.013698630137, Blast_Score=176, Evalue=4e-44, Organism=Homo sapiens, GI223468566, Length=259, Percent_Identity=39.3822393822394, Blast_Score=168, Evalue=9e-42, Organism=Homo sapiens, GI223468564, Length=250, Percent_Identity=39.6, Blast_Score=168, Evalue=9e-42, Organism=Homo sapiens, GI262359914, Length=371, Percent_Identity=32.0754716981132, Blast_Score=156, Evalue=4e-38, Organism=Homo sapiens, GI301601644, Length=170, Percent_Identity=41.7647058823529, Blast_Score=120, Evalue=3e-27, Organism=Escherichia coli, GI1790514, Length=422, Percent_Identity=35.3080568720379, Blast_Score=244, Evalue=6e-66, Organism=Escherichia coli, GI1789947, Length=439, Percent_Identity=30.2961275626424, Blast_Score=198, Evalue=5e-52, Organism=Escherichia coli, GI1788024, Length=450, Percent_Identity=30.8888888888889, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1789473, Length=394, Percent_Identity=28.6802030456853, Blast_Score=127, Evalue=1e-30, Organism=Caenorhabditis elegans, GI71983106, Length=460, Percent_Identity=32.3913043478261, Blast_Score=227, Evalue=8e-60, Organism=Caenorhabditis elegans, GI71983099, Length=460, Percent_Identity=32.3913043478261, Blast_Score=227, Evalue=9e-60, Organism=Caenorhabditis elegans, GI193206505, Length=427, Percent_Identity=34.8946135831382, Blast_Score=223, Evalue=2e-58, Organism=Caenorhabditis elegans, GI17537407, Length=419, Percent_Identity=35.5608591885441, Blast_Score=221, Evalue=7e-58, Organism=Caenorhabditis elegans, GI71996953, Length=455, Percent_Identity=33.1868131868132, Blast_Score=217, Evalue=1e-56, Organism=Caenorhabditis elegans, GI193206654, Length=447, Percent_Identity=29.9776286353468, Blast_Score=189, Evalue=2e-48, Organism=Caenorhabditis elegans, GI17541374, Length=392, Percent_Identity=30.6122448979592, Blast_Score=179, Evalue=3e-45, Organism=Drosophila melanogaster, GI24583025, Length=445, Percent_Identity=31.685393258427, Blast_Score=196, Evalue=2e-50, Organism=Drosophila melanogaster, GI17137668, Length=445, Percent_Identity=31.685393258427, Blast_Score=196, Evalue=2e-50, Organism=Drosophila melanogaster, GI24583023, Length=445, Percent_Identity=31.685393258427, Blast_Score=196, Evalue=2e-50, Organism=Drosophila melanogaster, GI281360481, Length=448, Percent_Identity=29.4642857142857, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI281360483, Length=448, Percent_Identity=29.4642857142857, Blast_Score=140, Evalue=1e-33, Organism=Drosophila melanogaster, GI17137666, Length=448, Percent_Identity=29.4642857142857, Blast_Score=140, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018107 [H]
Pfam domain/function: PF00375 SDF [H]
EC number: NA
Molecular weight: Translated: 46895; Mature: 46764
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATKTKKLGLTSKIIIGMFTGIILGLLLRNLFPESDFVKEYISEGVLNVIGTIFISSLK CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH MLVVPLVFVSLVCGTCSLSEPSKVGRLGGKTIAFYLFTTAIALSMAILVAIAVHPGNASM HHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHH VTEGMQFDVKQAPSLSDVLINLVPTNPLHAMSEGNMLQIIIFAVIFGFAISHIGERGARV HHCCCCCCHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH AALFNDLNEVIMRVVTLIMQLAPYGVFALMAKLALTLGMETFGSVVKYFFVVLGVLLIHA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVVYPTLLKVFSGLNPLTFIRKIRDVQLFAFSTASSNATLPVTIETAEHRMGVDNKIASF HHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEECCCCCEEEEEEECHHHHCCCCCCHHEE TLPLGATINMDGTAIMQGVATVFIAQVFGIELTITDYAMVVVTATLASIGTAGVPGVGLI EECCCCEECCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHH MLAMVLNQVGLPVEGIALIIGVDRLLDMVRTAVNVTGDTVATVVIAKSENEFNEAVFNDT HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHCCC QAGKVAPGFNAQVHAEENKLS CCCCCCCCCCCEEECCCCCCC >Mature Secondary Structure SATKTKKLGLTSKIIIGMFTGIILGLLLRNLFPESDFVKEYISEGVLNVIGTIFISSLK CCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH MLVVPLVFVSLVCGTCSLSEPSKVGRLGGKTIAFYLFTTAIALSMAILVAIAVHPGNASM HHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHH VTEGMQFDVKQAPSLSDVLINLVPTNPLHAMSEGNMLQIIIFAVIFGFAISHIGERGARV HHCCCCCCHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH AALFNDLNEVIMRVVTLIMQLAPYGVFALMAKLALTLGMETFGSVVKYFFVVLGVLLIHA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVVYPTLLKVFSGLNPLTFIRKIRDVQLFAFSTASSNATLPVTIETAEHRMGVDNKIASF HHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEECCCCCEEEEEEECHHHHCCCCCCHHEE TLPLGATINMDGTAIMQGVATVFIAQVFGIELTITDYAMVVVTATLASIGTAGVPGVGLI EECCCCEECCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHH MLAMVLNQVGLPVEGIALIIGVDRLLDMVRTAVNVTGDTVATVVIAKSENEFNEAVFNDT HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHCCC QAGKVAPGFNAQVHAEENKLS CCCCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-aspartate [Periplasm]; Proton [Periplasm]; L-glutamate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-aspartate [Periplasm] = Proton [Cytoplasm] + L-aspartate [Cytoplasm] Proton [Periplasm] + L-glutamate [Periplasm] = Proton [Cytoplasm] + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]