Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is 167623435

Identifier: 167623435

GI number: 167623435

Start: 1810030

End: 1811427

Strand: Reverse

Name: 167623435

Synonym: Shal_1504

Alternate gene names: NA

Gene position: 1811427-1810030 (Counterclockwise)

Preceding gene: 167623436

Following gene: 167623431

Centisome position: 34.66

GC content: 43.85

Gene sequence:

>1398_bases
ATGCAGCACTCTATATTTGACTGGATAAAAGCCATAAGCAGAAAGTTGATTTTTATGCTGTCAGCCCTCATGCCTCGCAG
TGAAAATAAGGCGTTGTTTGGCAGCTATAAGGAAGGTTTTTGCGATAATAGCAAGTATCTATACTTGCACTGGCAACAAA
CAGAATTTATTCGCTGCATCTGGATTAGCGGCAACCGCGACGTGATTAAGCAACTACAGAGTCAAAATCGAGAAGTGTAT
TATCGCTGGTCGATGAAGGGGATTTTTCATGCCCTGACAGCCAAATACTACTTCTATAATAGCTATATCGGCGATATTAA
TCAGTGGCTTGCAAATGGTGCGCAGAAGATAAACCTATGGCATGGATTGCCGATGAAGAAAATTGAATTCGACATTAACA
CCGGGCCAATGGCGCAAGTGTTTAACCCTAAAGGAAAGTTGGCGACATGCAAGCAGTGGCTATTCGCCCACCAGCAACAC
ATTACACCCGACTTGATGCTAAGCCCAAGTGAGCTTATCGACACCCTTTTTAGCAGCGCATTTAAGCTTGATAGCTCGCA
GCTTTTACGCGCAACCAATCCAAGAACCGATTACTACACCCTGTACTCAAATAAGCACTCAAGCATGCACTCAAGTAAGA
ACTCAAAACAGGACTCAAACCAGGACTCAAGTAAGCACTTAAGCCAGCGCTCTAGCCAGTGCCCAAGCGAGGCTCAATCA
CTCGATATACTTTTCGGGGAAAATACAAGCTCAACGCTACGGACTAATCGCGAGCAAGCTATTCGTTCAGGTATTAGCCC
GACTATTAGCCCGAGCATTATTTTGTACGTCCCCTCATGGCGTGATAGCCATCAGGAAGGCAATCCATACGCCAAGGCTT
TTGACTGGCAGCGGTTGTCAGATCATTTAGTGGCTAATAATCAATTGTTTTTACTGCGTCTACACCCTAATGAAGCAAGC
TTGGCAGATGAGCTTACGAGTTACGTCAATATCATCAATATTTCACAATTTGAAGATGTCTATGGCTTCTTGAAAGATGT
CGATCAGCTTATCACCGACTACTCATCGCTATTTATCGATGCACTACCACTGGGCACGCCTATCTGCTTCTATCGCTTCG
ATGAGCAGCATTATCAACAAGATTGCCGCGATATGTACGAATACGCCGAAAAACTCCCAGATATCGCGCCTAAATGCACA
GACTTTGACGAGTTATTAGAGCAGTTAGCACCGGAGGCAATCGCGAAGCAGAAATCTAACGCTATAAACGGTGAGCAAAG
GGCTGAACAAAAAAGTTATAAAAAGAACTATCAAGCAGTAACAGAGCTATTCTGGGGAAAGGATACGCCAAATGCGTTTG
AAGCATTAGAAGAAATAATTATTAAAAGAAGGACCTAG

Upstream 100 bases:

>100_bases
CCACTGAGATAAAAAGTAACCTAGCACAACCTAAACCCCTTGGTAATCACATTGGTGCCCCAGCAAATGATCCGACATCG
ACCAAGAAGATAGATAAGTA

Downstream 100 bases:

>100_bases
GTTAAAATAAGATCCTAGGTTCTAGGACGCTCCGCTCTGAGGACGGCCTTCAGCCTGCTAGGAAATCAAAAGCAAAACTG
CGTTGCCTTGACTTTGTCGC

Product: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase

Products: NA

Alternate protein names: TagB Protein; Poly(Glycerophosphate) Glycerophosphotransferase; Peptidyl-Dipeptidase A; Glycerophosphotransferase; Glycosyl/Glycerophosphate Transferase

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCIWISGNRDVIKQLQSQNREVY
YRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLWHGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQH
ITPDLMLSPSELIDTLFSSAFKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS
LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLSDHLVANNQLFLLRLHPNEAS
LADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFIDALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCT
DFDELLEQLAPEAIAKQKSNAINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT

Sequences:

>Translated_465_residues
MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCIWISGNRDVIKQLQSQNREVY
YRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLWHGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQH
ITPDLMLSPSELIDTLFSSAFKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS
LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLSDHLVANNQLFLLRLHPNEAS
LADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFIDALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCT
DFDELLEQLAPEAIAKQKSNAINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT
>Mature_465_residues
MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCIWISGNRDVIKQLQSQNREVY
YRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLWHGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQH
ITPDLMLSPSELIDTLFSSAFKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS
LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLSDHLVANNQLFLLRLHPNEAS
LADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFIDALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCT
DFDELLEQLAPEAIAKQKSNAINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT

Specific function: Unknown

COG id: COG1887

COG function: function code M; Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53940; Mature: 53940

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHCCCCCCCEEEEEECCCCEEEEE
WISGNRDVIKQLQSQNREVYYRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLW
EEECCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHC
HGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQHITPDLMLSPSELIDTLFSSA
CCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
FKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS
HCCCHHHHHHCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHC
LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLS
EEEEECCCCCHHHHCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCHHHHH
DHLVANNQLFLLRLHPNEASLADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFID
HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCTDFDELLEQLAPEAIAKQKSN
HHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHCC
AINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQHSIFDWIKAISRKLIFMLSALMPRSENKALFGSYKEGFCDNSKYLYLHWQQTEFIRCI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHCCCCCCCEEEEEECCCCEEEEE
WISGNRDVIKQLQSQNREVYYRWSMKGIFHALTAKYYFYNSYIGDINQWLANGAQKINLW
EEECCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHC
HGLPMKKIEFDINTGPMAQVFNPKGKLATCKQWLFAHQQHITPDLMLSPSELIDTLFSSA
CCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHH
FKLDSSQLLRATNPRTDYYTLYSNKHSSMHSSKNSKQDSNQDSSKHLSQRSSQCPSEAQS
HCCCHHHHHHCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHC
LDILFGENTSSTLRTNREQAIRSGISPTISPSIILYVPSWRDSHQEGNPYAKAFDWQRLS
EEEEECCCCCHHHHCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCHHHHH
DHLVANNQLFLLRLHPNEASLADELTSYVNIINISQFEDVYGFLKDVDQLITDYSSLFID
HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPLGTPICFYRFDEQHYQQDCRDMYEYAEKLPDIAPKCTDFDELLEQLAPEAIAKQKSN
HHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHCC
AINGEQRAEQKSYKKNYQAVTELFWGKDTPNAFEALEEIIIKRRT
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA