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The map label for this gene is fliN [H]

Identifier: 167623387

GI number: 167623387

Start: 1754855

End: 1755232

Strand: Direct

Name: fliN [H]

Synonym: Shal_1456

Alternate gene names: 167623387

Gene position: 1754855-1755232 (Clockwise)

Preceding gene: 167623386

Following gene: 167623388

Centisome position: 33.57

GC content: 42.59

Gene sequence:

>378_bases
ATGAGTACAGATACAGATGATTGGGCTTCGGCCATGGCAGAGCAAGCGATTGACGAAGCAAAAGCTGTTGAATTTGATGA
GTTTAGCAATGAAAGTGCGCCGTTAAGCGAGGATGAAGTGTCTAAGTTAGATGCGATTATGGATATTCCGGTTACGATTT
CGATGGAAGTGGGCCGTAGTTTTATTAATATTCGCAATTTGCTGCAGTTAAACCAAGGTTCGGTGGTAGAGCTCGATCGT
ATTGCTGGTGAGCCATTAGATGTTATGGTCAATGGTACCTTGATTGCCCATGGTGAGGTGGTTGTGGTAAACGATAAATT
TGGTATTCGTCTAACGGATGTCATTAGCCAAACTGAGCGAATTAAAAAGCTGAAGTAA

Upstream 100 bases:

>100_bases
TGAACAAATTCCACGACCAGAAACGGTTAAGACAGAATTACAGCTGGTGACCCATAAAGGGCGAGCGCGCGATCGTTCTG
ATATATAAGGTGAAAGGTAA

Downstream 100 bases:

>100_bases
AAGGGACGTTTAATGAGCTTTCAACTGGTTTTAGCCGGTGTGAGTAGTGCGGCAGCGCAAGCTGAAACGCCTGCTTCACC
AACGAGTATCGCAACGTTAT

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSTDTDDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDEVSKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDR
IAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK

Sequences:

>Translated_125_residues
MSTDTDDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDEVSKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDR
IAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK
>Mature_124_residues
STDTDDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDEVSKLDAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRI
AGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=119, Percent_Identity=47.0588235294118, Blast_Score=117, Evalue=2e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13751; Mature: 13620

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDTDDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDEVSKLDAIMDIPVTISMEVGRS
CCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHH
FINIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTER
HHHHHHHHHCCCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHH
IKKLK
HHCCC
>Mature Secondary Structure 
STDTDDWASAMAEQAIDEAKAVEFDEFSNESAPLSEDEVSKLDAIMDIPVTISMEVGRS
CCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHH
FINIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTER
HHHHHHHHHCCCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHH
IKKLK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]