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The map label for this gene is lafA [H]

Identifier: 167623369

GI number: 167623369

Start: 1735585

End: 1736406

Strand: Direct

Name: lafA [H]

Synonym: Shal_1438

Alternate gene names: 167623369

Gene position: 1735585-1736406 (Clockwise)

Preceding gene: 167623368

Following gene: 167623370

Centisome position: 33.2

GC content: 44.4

Gene sequence:

>822_bases
ATGGCTATTACCGTTAATACAAACGTTACATCGATGAAAGCGCAGAAGAACCTCAATACGTCTAGCCAAGGCTTAGCGAC
ATCTATGGAGCGCTTATCCAGTGGTCTTCGCATTAACAGTGCAAAAGACGATGCCGCAGGTTTGGCAATCTCTAACCGTC
TAGATTCACAGGTTCGTGGTCTTGACGTAGGTATGCGAAATGCTAACGATGCCATTTCGATTGCTCAGATAGCTGAAGGC
GCGATGCAGGAGCAAACCAACATGCTGCAGCGTATGCGTGATTTGACCATCCAAGCATCTAACGGTGCCAACAGCACAGA
CGATATTGCATCAATTCAAAAAGAGATCGATGCGTTAGCTACAGAAATTACTTCTATCGGTAATAGTACAGCGTTTGGTA
ATACTAAACTTTTAGATGGTGGTTTCTCGGCGGGTAAGAGCTTCCAAGTTGGACACCAGAAGGGCGAAGATATTAGTGTT
AAGGTATCTAAAGTTAATTCTAGTTCACTTGCTGTTGGAGGTTTAACACTTACCAACTCTGCTAACCGCCAATCAGCATT
AACCAAAATTGATGCTGCAATTAAAACCATCGATACTCAGCGTGCAGATTTAGGTGCGGTGCAAAATCGTCTAGCACACA
ACATCAGTAATAGTGCAAACACTCAGGCAAACGTGGCCGATGCTAAGAGCCGTATTGTAGATGTGGATTTTGCCAAAGAA
ACGGCAACGATGACAAAGAACCAGGTACTACAGCAAACGGGTAGCGCTATGCTTGCTCAGGCAAATCAGTTACCACAAGT
TGCACTATCTCTTCTTGGCTAA

Upstream 100 bases:

>100_bases
ATCTAGCAGTCAATGTGGACCTAAATAACTCGAACATAAATTAACCGAAATTAGCCAAGTCTGAAGTCTTGGCGGTAACT
TTAGATAAAGGAAAATAAAG

Downstream 100 bases:

>100_bases
CGATTATAGAAGCGCATACCGCAGTGGGTGATGCTTAATCTGCATTTGCAGATAAATAGCTGAGAAAGATCCATATTGAC
TGTTGATTCAGTGAATATGG

Product: flagellin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MAITVNTNVTSMKAQKNLNTSSQGLATSMERLSSGLRINSAKDDAAGLAISNRLDSQVRGLDVGMRNANDAISIAQIAEG
AMQEQTNMLQRMRDLTIQASNGANSTDDIASIQKEIDALATEITSIGNSTAFGNTKLLDGGFSAGKSFQVGHQKGEDISV
KVSKVNSSSLAVGGLTLTNSANRQSALTKIDAAIKTIDTQRADLGAVQNRLAHNISNSANTQANVADAKSRIVDVDFAKE
TATMTKNQVLQQTGSAMLAQANQLPQVALSLLG

Sequences:

>Translated_273_residues
MAITVNTNVTSMKAQKNLNTSSQGLATSMERLSSGLRINSAKDDAAGLAISNRLDSQVRGLDVGMRNANDAISIAQIAEG
AMQEQTNMLQRMRDLTIQASNGANSTDDIASIQKEIDALATEITSIGNSTAFGNTKLLDGGFSAGKSFQVGHQKGEDISV
KVSKVNSSSLAVGGLTLTNSANRQSALTKIDAAIKTIDTQRADLGAVQNRLAHNISNSANTQANVADAKSRIVDVDFAKE
TATMTKNQVLQQTGSAMLAQANQLPQVALSLLG
>Mature_272_residues
AITVNTNVTSMKAQKNLNTSSQGLATSMERLSSGLRINSAKDDAAGLAISNRLDSQVRGLDVGMRNANDAISIAQIAEGA
MQEQTNMLQRMRDLTIQASNGANSTDDIASIQKEIDALATEITSIGNSTAFGNTKLLDGGFSAGKSFQVGHQKGEDISVK
VSKVNSSSLAVGGLTLTNSANRQSALTKIDAAIKTIDTQRADLGAVQNRLAHNISNSANTQANVADAKSRIVDVDFAKET
ATMTKNQVLQQTGSAMLAQANQLPQVALSLLG

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Essential for lateral flagellar synthesis and swarming motility [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=179, Percent_Identity=44.1340782122905, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 28550; Mature: 28419

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITVNTNVTSMKAQKNLNTSSQGLATSMERLSSGLRINSAKDDAAGLAISNRLDSQVRG
CEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHH
LDVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTIQASNGANSTDDIASIQKEIDALA
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHH
TEITSIGNSTAFGNTKLLDGGFSAGKSFQVGHQKGEDISVKVSKVNSSSLAVGGLTLTNS
HHHHHCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCEEEEEEEECCCCEEECCEEECCC
ANRQSALTKIDAAIKTIDTQRADLGAVQNRLAHNISNSANTQANVADAKSRIVDVDFAKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEHHHH
TATMTKNQVLQQTGSAMLAQANQLPQVALSLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AITVNTNVTSMKAQKNLNTSSQGLATSMERLSSGLRINSAKDDAAGLAISNRLDSQVRG
EEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHH
LDVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTIQASNGANSTDDIASIQKEIDALA
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHH
TEITSIGNSTAFGNTKLLDGGFSAGKSFQVGHQKGEDISVKVSKVNSSSLAVGGLTLTNS
HHHHHCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCEEEEEEEECCCCEEECCEEECCC
ANRQSALTKIDAAIKTIDTQRADLGAVQNRLAHNISNSANTQANVADAKSRIVDVDFAKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEHHHH
TATMTKNQVLQQTGSAMLAQANQLPQVALSLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8501040; 12620739 [H]