Click here to switch to the map view.

The map label for this gene is yfjK [C]

Identifier: 167623348

GI number: 167623348

Start: 1712142

End: 1714655

Strand: Direct

Name: yfjK [C]

Synonym: Shal_1417

Alternate gene names: 167623348

Gene position: 1712142-1714655 (Clockwise)

Preceding gene: 167623347

Following gene: 167623351

Centisome position: 32.76

GC content: 31.66

Gene sequence:

>2514_bases
TTGCAAAAATCTGATGATGCAATAATTTATTTGTGTAACAAAATCATAAGTAGCGTTGAGTTTGAAAATGTTTTTGATAA
ACTTTTTAATCTTGTAACTCTAAATTTTTTTTCTGTTAATGATACTAATAATATTCTTATATCTGAATATAAGAAACTTC
TTAAGTATAGTGATTTTCTTTCTAACTCCACAGTCGAATCACATAGAACTCTGGCTCTACAAATTATAACCTTACTGTAC
AAACTTTATTTCAATGATGAAGGTTACCAAGTCCATCTAAAATCAATATTTTCTAAGTTTGGATTGTTTGGAGCTGAAGA
GTCTTTCGTTAAAGAAGAACTTAGTTTACCAGATTCATTAGAATACGAACGAAATCTAAAAAGATTGGTTCAAAGTATCA
ATGCAGGTCAAGATATTTTTACTGACTCCCAGTATAAAATTCATGGAGGAATGAGTAAAAATAATGTTTTCAGTTTTTCA
GGACCTACATCTCTTGGTAAATCTTTTTTGTTAAAACATTCAGCTATTAAAATGCTGAATAATAACAATATAATTGTTTT
TATCCTTCCTACTAAAGCTCTTCTGGAAGAGTACCACAATGACTTGAGGAAGATGCTTTCTATTGAGGGTGTTATGGATG
TTAATGTTGCAAAGTCAGTTTCATCCGTAAAAAAAGGGGTTAAGAATATTCTAATATTTACTCAAGAAAGATTGAATAGT
TTCTTGTTTGATGATGATTTTAACTCAGTAAATATAGATGTTTTAATTGTAGATGAAGCTCATAAATTGTCTGAATTCAA
CCCTAGGAGTATTACTTTATATAAAGTAATACGTCGTTCTATAGATAAGTTTTCAAATTTGAAGTTGTACTTCTCTAGCC
CTGTAATTCATAACCCTGAAATATTCCTTAAAACATTCAATATTGACAGTGACAATAAATTCATTACTGTCAAGGAAAGT
CCTGTTACACAGAGTCTTTATGTTTATGACTTACAAGAAAATATAGTATCCTCTTATAACCCTAGGAGTAAGGTTTTTGA
TAAACTAAAAGTAGTAGAAAATATTACAAGTAGTTACAGTCTTATTTCTTATCTTGGAAATAGATCTAAATCTAATTTGA
TTTTTTCATCCAGCAAAACAGATGCCATTCTTAAAGCCTCGGAGTTTTTGAACTTTGTAAAAAGAGAAGGGCTGTTGTGG
GATGTAGATAAAGAACTTTCTATTGAAGCAGATATTGTTAAGGGGTTGATTCATGATGATTATAACTTGTCTGAATTAAT
GAGGCATGGAATAGCGTATCATCATGGAACGCTACCTAACTTTATAAGAAAAAGAGTAGAGGAATTGTATTCCAATAAAA
GATTGAAATACATATTCTGTACTTCAACACTTCTTGAAGGTGTTAATTTGCCAACGGAAAATATTTTTATTTTCCCTATG
AAAAACAAAAAAAGTACTTTGTCAGTTGAATCAAAGCTTAGTTTTTGGAACTTGGCAGGGAGAGCAGGACGTTACAAAAA
TGAACTGAATGGAAATATTATCTGTCTTGGCAATCGAAATGACTGGGAAATTATGGGGGAGCTGGTTAGTAATGATAGAG
AGGTAAGTATAAATAATCCATTGGATGAGACATTTTCTAAACATCGAAAGATTCGCAATATTCTTAATGATAAAACATTG
GACCCGCACGCAGTTATAAAAGATGTCACATCAATAGTTCTTGCTGATGTTATGGGTTTTAAGAGGCATGGGGCAATGTC
TAGTGTTCTTTTAAGTATTCCTGAAAAGTTTAGAGATAACGTAATTGAAGAGGGGTGGCAGTATATCTGTCGACACGGAA
TTCGAGATATTAATCATTTGGCATACTCTTCTAATCATCGAATTAGTACTGAGCAACATTACAAGGCTTGGGTTTATGCT
AAAGATAAAGGGTATAAGTTGAAATCTTTATCCAGAGACTCAGTGAAAGATTTTATCAATGTTTTGGATGAGGTCTACGG
AATAAGAAAAACTAAAGCATCTTTATCTCAGCTAATAAATGTAACATACTCTTGGTTGTACGGTGATTCTTTGAGGAAAA
TAATCAGTGATTCAATAAAATATTCAAAATCTGTCAAGGATGCTAGTTATCAATACGTTACATTTGAACCGTGTAATAAA
GAACATGTTAACTTTAAAATAATGGAGGTTATATCCACAATTGAAAATGAAGTTACTTTTAAACTTGAAATGTATTGTGC
TCATTATTTTCAGGTGTTATTAGGGGTATATGGTGAACATGAATCTGGAATCAACTTATCGCCTTTTTTAGAGTATGGGA
CAATGGACGTTAAAACTATCGCACTTCAAGATTATGGATTTTCCAGAGCAGCGGCTCTTGAGATTGAAAAACAATATTCA
AAATGTGTTCGATATGATGAAAATGGTCAGATTTCTCAGTTAAATAAGCAAATGTTGCTTACTATGGCTGGAGCTAATAG
CGTTGTCGCGAAAGAGGTCATGTGGATTGTATAG

Upstream 100 bases:

>100_bases
GAGGACTTAATAAATAGAACTAAGTATGGTGTTAATCTATATTTGTTTGTTTTACCAGTTAATTCCAGACAAGAAATTGC
AAATTTATTGGAGGCGGAAG

Downstream 100 bases:

>100_bases
AGATTCAACTTTATATAATTTCTAGTACAGTTATTGACAGAACTCCAAGTTAACGGCTTTTGGCTTTTTGCTAATGAGAT
AGACCATTCATGTACGCGAG

Product: helicase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 837; Mature: 837

Protein sequence:

>837_residues
MQKSDDAIIYLCNKIISSVEFENVFDKLFNLVTLNFFSVNDTNNILISEYKKLLKYSDFLSNSTVESHRTLALQIITLLY
KLYFNDEGYQVHLKSIFSKFGLFGAEESFVKEELSLPDSLEYERNLKRLVQSINAGQDIFTDSQYKIHGGMSKNNVFSFS
GPTSLGKSFLLKHSAIKMLNNNNIIVFILPTKALLEEYHNDLRKMLSIEGVMDVNVAKSVSSVKKGVKNILIFTQERLNS
FLFDDDFNSVNIDVLIVDEAHKLSEFNPRSITLYKVIRRSIDKFSNLKLYFSSPVIHNPEIFLKTFNIDSDNKFITVKES
PVTQSLYVYDLQENIVSSYNPRSKVFDKLKVVENITSSYSLISYLGNRSKSNLIFSSSKTDAILKASEFLNFVKREGLLW
DVDKELSIEADIVKGLIHDDYNLSELMRHGIAYHHGTLPNFIRKRVEELYSNKRLKYIFCTSTLLEGVNLPTENIFIFPM
KNKKSTLSVESKLSFWNLAGRAGRYKNELNGNIICLGNRNDWEIMGELVSNDREVSINNPLDETFSKHRKIRNILNDKTL
DPHAVIKDVTSIVLADVMGFKRHGAMSSVLLSIPEKFRDNVIEEGWQYICRHGIRDINHLAYSSNHRISTEQHYKAWVYA
KDKGYKLKSLSRDSVKDFINVLDEVYGIRKTKASLSQLINVTYSWLYGDSLRKIISDSIKYSKSVKDASYQYVTFEPCNK
EHVNFKIMEVISTIENEVTFKLEMYCAHYFQVLLGVYGEHESGINLSPFLEYGTMDVKTIALQDYGFSRAAALEIEKQYS
KCVRYDENGQISQLNKQMLLTMAGANSVVAKEVMWIV

Sequences:

>Translated_837_residues
MQKSDDAIIYLCNKIISSVEFENVFDKLFNLVTLNFFSVNDTNNILISEYKKLLKYSDFLSNSTVESHRTLALQIITLLY
KLYFNDEGYQVHLKSIFSKFGLFGAEESFVKEELSLPDSLEYERNLKRLVQSINAGQDIFTDSQYKIHGGMSKNNVFSFS
GPTSLGKSFLLKHSAIKMLNNNNIIVFILPTKALLEEYHNDLRKMLSIEGVMDVNVAKSVSSVKKGVKNILIFTQERLNS
FLFDDDFNSVNIDVLIVDEAHKLSEFNPRSITLYKVIRRSIDKFSNLKLYFSSPVIHNPEIFLKTFNIDSDNKFITVKES
PVTQSLYVYDLQENIVSSYNPRSKVFDKLKVVENITSSYSLISYLGNRSKSNLIFSSSKTDAILKASEFLNFVKREGLLW
DVDKELSIEADIVKGLIHDDYNLSELMRHGIAYHHGTLPNFIRKRVEELYSNKRLKYIFCTSTLLEGVNLPTENIFIFPM
KNKKSTLSVESKLSFWNLAGRAGRYKNELNGNIICLGNRNDWEIMGELVSNDREVSINNPLDETFSKHRKIRNILNDKTL
DPHAVIKDVTSIVLADVMGFKRHGAMSSVLLSIPEKFRDNVIEEGWQYICRHGIRDINHLAYSSNHRISTEQHYKAWVYA
KDKGYKLKSLSRDSVKDFINVLDEVYGIRKTKASLSQLINVTYSWLYGDSLRKIISDSIKYSKSVKDASYQYVTFEPCNK
EHVNFKIMEVISTIENEVTFKLEMYCAHYFQVLLGVYGEHESGINLSPFLEYGTMDVKTIALQDYGFSRAAALEIEKQYS
KCVRYDENGQISQLNKQMLLTMAGANSVVAKEVMWIV
>Mature_837_residues
MQKSDDAIIYLCNKIISSVEFENVFDKLFNLVTLNFFSVNDTNNILISEYKKLLKYSDFLSNSTVESHRTLALQIITLLY
KLYFNDEGYQVHLKSIFSKFGLFGAEESFVKEELSLPDSLEYERNLKRLVQSINAGQDIFTDSQYKIHGGMSKNNVFSFS
GPTSLGKSFLLKHSAIKMLNNNNIIVFILPTKALLEEYHNDLRKMLSIEGVMDVNVAKSVSSVKKGVKNILIFTQERLNS
FLFDDDFNSVNIDVLIVDEAHKLSEFNPRSITLYKVIRRSIDKFSNLKLYFSSPVIHNPEIFLKTFNIDSDNKFITVKES
PVTQSLYVYDLQENIVSSYNPRSKVFDKLKVVENITSSYSLISYLGNRSKSNLIFSSSKTDAILKASEFLNFVKREGLLW
DVDKELSIEADIVKGLIHDDYNLSELMRHGIAYHHGTLPNFIRKRVEELYSNKRLKYIFCTSTLLEGVNLPTENIFIFPM
KNKKSTLSVESKLSFWNLAGRAGRYKNELNGNIICLGNRNDWEIMGELVSNDREVSINNPLDETFSKHRKIRNILNDKTL
DPHAVIKDVTSIVLADVMGFKRHGAMSSVLLSIPEKFRDNVIEEGWQYICRHGIRDINHLAYSSNHRISTEQHYKAWVYA
KDKGYKLKSLSRDSVKDFINVLDEVYGIRKTKASLSQLINVTYSWLYGDSLRKIISDSIKYSKSVKDASYQYVTFEPCNK
EHVNFKIMEVISTIENEVTFKLEMYCAHYFQVLLGVYGEHESGINLSPFLEYGTMDVKTIALQDYGFSRAAALEIEKQYS
KCVRYDENGQISQLNKQMLLTMAGANSVVAKEVMWIV

Specific function: Unknown

COG id: COG1204

COG function: function code R; Superfamily II helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1788980, Length=434, Percent_Identity=24.1935483870968, Blast_Score=91, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17537127, Length=425, Percent_Identity=22.5882352941176, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR010995
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR022965 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 96178; Mature: 96178

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSDDAIIYLCNKIISSVEFENVFDKLFNLVTLNFFSVNDTNNILISEYKKLLKYSDFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHH
SNSTVESHRTLALQIITLLYKLYFNDEGYQVHLKSIFSKFGLFGAEESFVKEELSLPDSL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHCCCCCC
EYERNLKRLVQSINAGQDIFTDSQYKIHGGMSKNNVFSFSGPTSLGKSFLLKHSAIKMLN
HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
NNNIIVFILPTKALLEEYHNDLRKMLSIEGVMDVNVAKSVSSVKKGVKNILIFTQERLNS
CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHEEEHHHHHH
FLFDDDFNSVNIDVLIVDEAHKLSEFNPRSITLYKVIRRSIDKFSNLKLYFSSPVIHNPE
HCCCCCCCEEEEEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCEECCC
IFLKTFNIDSDNKFITVKESPVTQSLYVYDLQENIVSSYNPRSKVFDKLKVVENITSSYS
EEEEEECCCCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LISYLGNRSKSNLIFSSSKTDAILKASEFLNFVKREGLLWDVDKELSIEADIVKGLIHDD
HHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCC
YNLSELMRHGIAYHHGTLPNFIRKRVEELYSNKRLKYIFCTSTLLEGVNLPTENIFIFPM
CCHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCEEEEEE
KNKKSTLSVESKLSFWNLAGRAGRYKNELNGNIICLGNRNDWEIMGELVSNDREVSINNP
CCCCCEEEHHHHHHHHHCCCCCCCCHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEECCC
LDETFSKHRKIRNILNDKTLDPHAVIKDVTSIVLADVMGFKRHGAMSSVLLSIPEKFRDN
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHH
VIEEGWQYICRHGIRDINHLAYSSNHRISTEQHYKAWVYAKDKGYKLKSLSRDSVKDFIN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEECCCCHHHHHHHHH
VLDEVYGIRKTKASLSQLINVTYSWLYGDSLRKIISDSIKYSKSVKDASYQYVTFEPCNK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
EHVNFKIMEVISTIENEVTFKLEMYCAHYFQVLLGVYGEHESGINLSPFLEYGTMDVKTI
CCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEE
ALQDYGFSRAAALEIEKQYSKCVRYDENGQISQLNKQMLLTMAGANSVVAKEVMWIV
EEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MQKSDDAIIYLCNKIISSVEFENVFDKLFNLVTLNFFSVNDTNNILISEYKKLLKYSDFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHH
SNSTVESHRTLALQIITLLYKLYFNDEGYQVHLKSIFSKFGLFGAEESFVKEELSLPDSL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHCCCCCC
EYERNLKRLVQSINAGQDIFTDSQYKIHGGMSKNNVFSFSGPTSLGKSFLLKHSAIKMLN
HHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
NNNIIVFILPTKALLEEYHNDLRKMLSIEGVMDVNVAKSVSSVKKGVKNILIFTQERLNS
CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHEEEHHHHHH
FLFDDDFNSVNIDVLIVDEAHKLSEFNPRSITLYKVIRRSIDKFSNLKLYFSSPVIHNPE
HCCCCCCCEEEEEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCEECCC
IFLKTFNIDSDNKFITVKESPVTQSLYVYDLQENIVSSYNPRSKVFDKLKVVENITSSYS
EEEEEECCCCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LISYLGNRSKSNLIFSSSKTDAILKASEFLNFVKREGLLWDVDKELSIEADIVKGLIHDD
HHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCC
YNLSELMRHGIAYHHGTLPNFIRKRVEELYSNKRLKYIFCTSTLLEGVNLPTENIFIFPM
CCHHHHHHCCCHHCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCEEEEEE
KNKKSTLSVESKLSFWNLAGRAGRYKNELNGNIICLGNRNDWEIMGELVSNDREVSINNP
CCCCCEEEHHHHHHHHHCCCCCCCCHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEECCC
LDETFSKHRKIRNILNDKTLDPHAVIKDVTSIVLADVMGFKRHGAMSSVLLSIPEKFRDN
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHH
VIEEGWQYICRHGIRDINHLAYSSNHRISTEQHYKAWVYAKDKGYKLKSLSRDSVKDFIN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEECCCCHHHHHHHHH
VLDEVYGIRKTKASLSQLINVTYSWLYGDSLRKIISDSIKYSKSVKDASYQYVTFEPCNK
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
EHVNFKIMEVISTIENEVTFKLEMYCAHYFQVLLGVYGEHESGINLSPFLEYGTMDVKTI
CCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEE
ALQDYGFSRAAALEIEKQYSKCVRYDENGQISQLNKQMLLTMAGANSVVAKEVMWIV
EEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA