| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623316
Identifier: 167623316
GI number: 167623316
Start: 1669731
End: 1670303
Strand: Reverse
Name: 167623316
Synonym: Shal_1384
Alternate gene names: NA
Gene position: 1670303-1669731 (Counterclockwise)
Preceding gene: 167623317
Following gene: 167623311
Centisome position: 31.96
GC content: 43.63
Gene sequence:
>573_bases ATGTTACGCAAGTTATTATTAGTCACTTTCATCGCTATTCTGGCGGGCTGTGCTAGCCCGCAGACCAATACGGTTGAAGG AAAAAAATTGTTGATTATCGCCGGTAACGGGCTCAACACCACCTATGAAGATAGCCCCGCTGCAAATGGTTTTCTTTTTG AAGTAGGTGAAACCTTTGCTACTGACCTTGGCAATAAACTGGAAGAGTTTGGCTTTGAATCTTACCTGTTTGTCAGTAAA GATTCGGCGACCTATAAACAAGAGTATCAACGCGCAGTAAACCGCTTAATGACTGACGCTACCATTGATGGTGTCGCCGA AATTAAAGTGCTGCATACTAAAGATGGAAAGGTCAATGAAATCGCAGTTTACGCAACTTACTTTACCACCGACCCTTTGA TAAAAGGCTGCGACCTACGCACCTCTAAAAACTGTTATAGCGTCAAAGAACTAGACAAAATCGGTGATCGAAAATACTTA ATAGTGGACCAAGCAACGGCAAGCTTTAATGACACTCCGGTATCTGAAATGGTAACCGACACCGCACTGTTCATCTATCG CGCCGAGCTGTAA
Upstream 100 bases:
>100_bases TTATCAAATTTACAGCTAGATTTACCAACTCGCGAGGATTTATAATCGCGCCAATTTCGTGTTTAAAAAATACCGACCTT TCATCATTACGAGTACAAAT
Downstream 100 bases:
>100_bases ATCTATTTATCTCGCTACAAGTTTTCTTGCTGCACTAGGCTTCTAAAGAGGCCTAGTCACAAGTTCTTTAACTAGCTACA GCTCTCCCTAGCCCTGCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFATDLGNKLEEFGFESYLFVSK DSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNEIAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYL IVDQATASFNDTPVSEMVTDTALFIYRAEL
Sequences:
>Translated_190_residues MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFATDLGNKLEEFGFESYLFVSK DSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNEIAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYL IVDQATASFNDTPVSEMVTDTALFIYRAEL >Mature_190_residues MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFATDLGNKLEEFGFESYLFVSK DSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNEIAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYL IVDQATASFNDTPVSEMVTDTALFIYRAEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21027; Mature: 21027
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFA CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHH TDLGNKLEEFGFESYLFVSKDSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNE HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEE IAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYLIVDQATASFNDTPVSEMVTD EEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH TALFIYRAEL HEEEEEEECC >Mature Secondary Structure MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFA CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHH TDLGNKLEEFGFESYLFVSKDSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNE HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEE IAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYLIVDQATASFNDTPVSEMVTD EEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH TALFIYRAEL HEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA