Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is 167623316

Identifier: 167623316

GI number: 167623316

Start: 1669731

End: 1670303

Strand: Reverse

Name: 167623316

Synonym: Shal_1384

Alternate gene names: NA

Gene position: 1670303-1669731 (Counterclockwise)

Preceding gene: 167623317

Following gene: 167623311

Centisome position: 31.96

GC content: 43.63

Gene sequence:

>573_bases
ATGTTACGCAAGTTATTATTAGTCACTTTCATCGCTATTCTGGCGGGCTGTGCTAGCCCGCAGACCAATACGGTTGAAGG
AAAAAAATTGTTGATTATCGCCGGTAACGGGCTCAACACCACCTATGAAGATAGCCCCGCTGCAAATGGTTTTCTTTTTG
AAGTAGGTGAAACCTTTGCTACTGACCTTGGCAATAAACTGGAAGAGTTTGGCTTTGAATCTTACCTGTTTGTCAGTAAA
GATTCGGCGACCTATAAACAAGAGTATCAACGCGCAGTAAACCGCTTAATGACTGACGCTACCATTGATGGTGTCGCCGA
AATTAAAGTGCTGCATACTAAAGATGGAAAGGTCAATGAAATCGCAGTTTACGCAACTTACTTTACCACCGACCCTTTGA
TAAAAGGCTGCGACCTACGCACCTCTAAAAACTGTTATAGCGTCAAAGAACTAGACAAAATCGGTGATCGAAAATACTTA
ATAGTGGACCAAGCAACGGCAAGCTTTAATGACACTCCGGTATCTGAAATGGTAACCGACACCGCACTGTTCATCTATCG
CGCCGAGCTGTAA

Upstream 100 bases:

>100_bases
TTATCAAATTTACAGCTAGATTTACCAACTCGCGAGGATTTATAATCGCGCCAATTTCGTGTTTAAAAAATACCGACCTT
TCATCATTACGAGTACAAAT

Downstream 100 bases:

>100_bases
ATCTATTTATCTCGCTACAAGTTTTCTTGCTGCACTAGGCTTCTAAAGAGGCCTAGTCACAAGTTCTTTAACTAGCTACA
GCTCTCCCTAGCCCTGCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFATDLGNKLEEFGFESYLFVSK
DSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNEIAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYL
IVDQATASFNDTPVSEMVTDTALFIYRAEL

Sequences:

>Translated_190_residues
MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFATDLGNKLEEFGFESYLFVSK
DSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNEIAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYL
IVDQATASFNDTPVSEMVTDTALFIYRAEL
>Mature_190_residues
MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFATDLGNKLEEFGFESYLFVSK
DSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNEIAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYL
IVDQATASFNDTPVSEMVTDTALFIYRAEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21027; Mature: 21027

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFA
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHH
TDLGNKLEEFGFESYLFVSKDSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNE
HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEE
IAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYLIVDQATASFNDTPVSEMVTD
EEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH
TALFIYRAEL
HEEEEEEECC
>Mature Secondary Structure
MLRKLLLVTFIAILAGCASPQTNTVEGKKLLIIAGNGLNTTYEDSPAANGFLFEVGETFA
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHH
TDLGNKLEEFGFESYLFVSKDSATYKQEYQRAVNRLMTDATIDGVAEIKVLHTKDGKVNE
HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEE
IAVYATYFTTDPLIKGCDLRTSKNCYSVKELDKIGDRKYLIVDQATASFNDTPVSEMVTD
EEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH
TALFIYRAEL
HEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA