| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is ushA [C]
Identifier: 167623294
GI number: 167623294
Start: 1635786
End: 1637552
Strand: Reverse
Name: ushA [C]
Synonym: Shal_1362
Alternate gene names: 167623294
Gene position: 1637552-1635786 (Counterclockwise)
Preceding gene: 167623295
Following gene: 167623289
Centisome position: 31.33
GC content: 45.5
Gene sequence:
>1767_bases ATGACAACAGCACAGTCCACTATCGCGCAATACAAGCTAAAGCTTGCTCATATCAACGATACCCACTCTCACTTCGATGC AAACCGTATTCAATTTACGATTTATGAGCAACAAAAAGAGCTGACTCTTTATAGCCATACTGGTGGTTACGCCCGTATCG CCTATCAGCTTAAACAAGCAAAATTAGCCGCCAAAGACAATCAACAGAGTTTTCTATTTCTGCACGGTGGCGACAGCTTT CAGGGCACCCTTTACTTCAATGAGTTTAAGGGCAAAGCTAACTCTGACCTGTTGAATATGCTTCAACCAGACGCAATGGT GCTCGGCAATCATGAAATTGATGCGGGTAATGAACCAGTACTCGACTTTCTCAATGATATTCACTTTCCACTGTTAGCTG GCAATATGGATCTTAGCCAAGAATGCCAGCAAAAGTGCGCGCGTCTCGCAAATCACCCTAAGCTGCTCGACTTAGAACCA CTGACCCAAACGGCAAAAGTGTTGCTAAAGCCACTACAAGATAAGCAAGTGGCTATTATTGGTATCACCTTAGATCAGAT GACTGAAATTGCTCAGCCAGATGATGATACCCACTTTGTCAGTGCTATCGAAACCGCTCGTCGCAGTGTAGCCAAGCTAA AAGCCGATGGCATAGACCATATTGTCGTGTTGAGCCATTTAGGACTCGATCAAGATAGAGTGCTAGCCAAAGAGGTCGAT GGCATTAGCGTTATCGTTGGTGGTCACTCACATACACTGCAAGGTGACTTTCGCGCCCTTGGCTTATCTAATATGCCCTA CGGTGAACGCATCAATAACACCGCGATATTGCATGCAGGTAAGTATGCCGAAACCTTGGGCATAGCCGATATTACCTTCG ATGCCAATGGCAACGTGACCAGCCTATCAGGTGGCAATTACTTCATGTTAGATGAGCAATTTATTTTGCAAGCATCTGAC GATGTGAGTCCGCAAGATTACCTCAACGTGAGACAAACATTGAAGTCTCACCCTCTTATATTATGGGATGATGAAGATAG CCAAGTACAAGCTCGGATCTTGCAAAAGTATCGCCCTAGCCTAGATGCATTAAATAATAAAATCTTGGGTTTTGTTCCCA GAAACTTAGTCCATACTCGCCTACCGAGCAAAGCCTTACCTCACGGCAGTGAAATTGCGCCTTGGGTGAGTCGTAGCATG TATCAAGAAACCCGTGAACTGGGTATTCAAGTTGATTTCGCGCTTCATAATGCTGGCGGAGTACGTCAATCGCTTGATAA AGGTGAGCTGAGTTTAGCCGAAGTATTGGGCCGCATTCTACCTTTTGACATCCCGCTGGTGACGTATGAGATCCAGGGGC AATATCTATTTCAGATACTTGAGTCAGCGATTAATGGCGCAACCAATAATAGTGTGATCGGCACTGGCGCCGGCAGTTTC CCCTACACTTATGGCTTGAAATACTTTTACGATGGCCGGCTAGCATTGGGTCAACGCATTATTAAGCTTGAAGTATTGCA TATAGAAGACGGAAAACAGTTATGGTTACCTCTTGATGCCGACGCCTATTACACCGGAGTGTCATCGTCTTACACAGCGT CAGGCAAAGAGGGCTATTTTCCTATCTTGCAAGCGAATTGGCAGCGTGATGTTGAGGGCTTAAGTCTTCCCGGAGCCTTT ACCCGTTTTATCAGCAAGGCGCAGACCTTAGATGAAGTGCTAGAGCCTCAGGTTCATTACACTAGCCATAATCACTTGCA GATATAA
Upstream 100 bases:
>100_bases GTTAGATTAAAACTCGTTAACCCTGCCCGACTATACAAAGTTGACGTATTAATAGTCGTATCGCTCATGCTATACTCCTC GTTTGGTCCAGAGGAATAAG
Downstream 100 bases:
>100_bases CACAAGCAAAAAAACTGACGTTACGAGCAAGGGCAGAACCTTTTTGCCCTGCCCTTAAGCTGTACTTAAATGAGTGCATA GAAATAGAAGTTAAAAATAT
Product: 5'-nucleotidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 588; Mature: 587
Protein sequence:
>588_residues MTTAQSTIAQYKLKLAHINDTHSHFDANRIQFTIYEQQKELTLYSHTGGYARIAYQLKQAKLAAKDNQQSFLFLHGGDSF QGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAGNEPVLDFLNDIHFPLLAGNMDLSQECQQKCARLANHPKLLDLEP LTQTAKVLLKPLQDKQVAIIGITLDQMTEIAQPDDDTHFVSAIETARRSVAKLKADGIDHIVVLSHLGLDQDRVLAKEVD GISVIVGGHSHTLQGDFRALGLSNMPYGERINNTAILHAGKYAETLGIADITFDANGNVTSLSGGNYFMLDEQFILQASD DVSPQDYLNVRQTLKSHPLILWDDEDSQVQARILQKYRPSLDALNNKILGFVPRNLVHTRLPSKALPHGSEIAPWVSRSM YQETRELGIQVDFALHNAGGVRQSLDKGELSLAEVLGRILPFDIPLVTYEIQGQYLFQILESAINGATNNSVIGTGAGSF PYTYGLKYFYDGRLALGQRIIKLEVLHIEDGKQLWLPLDADAYYTGVSSSYTASGKEGYFPILQANWQRDVEGLSLPGAF TRFISKAQTLDEVLEPQVHYTSHNHLQI
Sequences:
>Translated_588_residues MTTAQSTIAQYKLKLAHINDTHSHFDANRIQFTIYEQQKELTLYSHTGGYARIAYQLKQAKLAAKDNQQSFLFLHGGDSF QGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAGNEPVLDFLNDIHFPLLAGNMDLSQECQQKCARLANHPKLLDLEP LTQTAKVLLKPLQDKQVAIIGITLDQMTEIAQPDDDTHFVSAIETARRSVAKLKADGIDHIVVLSHLGLDQDRVLAKEVD GISVIVGGHSHTLQGDFRALGLSNMPYGERINNTAILHAGKYAETLGIADITFDANGNVTSLSGGNYFMLDEQFILQASD DVSPQDYLNVRQTLKSHPLILWDDEDSQVQARILQKYRPSLDALNNKILGFVPRNLVHTRLPSKALPHGSEIAPWVSRSM YQETRELGIQVDFALHNAGGVRQSLDKGELSLAEVLGRILPFDIPLVTYEIQGQYLFQILESAINGATNNSVIGTGAGSF PYTYGLKYFYDGRLALGQRIIKLEVLHIEDGKQLWLPLDADAYYTGVSSSYTASGKEGYFPILQANWQRDVEGLSLPGAF TRFISKAQTLDEVLEPQVHYTSHNHLQI >Mature_587_residues TTAQSTIAQYKLKLAHINDTHSHFDANRIQFTIYEQQKELTLYSHTGGYARIAYQLKQAKLAAKDNQQSFLFLHGGDSFQ GTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAGNEPVLDFLNDIHFPLLAGNMDLSQECQQKCARLANHPKLLDLEPL TQTAKVLLKPLQDKQVAIIGITLDQMTEIAQPDDDTHFVSAIETARRSVAKLKADGIDHIVVLSHLGLDQDRVLAKEVDG ISVIVGGHSHTLQGDFRALGLSNMPYGERINNTAILHAGKYAETLGIADITFDANGNVTSLSGGNYFMLDEQFILQASDD VSPQDYLNVRQTLKSHPLILWDDEDSQVQARILQKYRPSLDALNNKILGFVPRNLVHTRLPSKALPHGSEIAPWVSRSMY QETRELGIQVDFALHNAGGVRQSLDKGELSLAEVLGRILPFDIPLVTYEIQGQYLFQILESAINGATNNSVIGTGAGSFP YTYGLKYFYDGRLALGQRIIKLEVLHIEDGKQLWLPLDADAYYTGVSSSYTASGKEGYFPILQANWQRDVEGLSLPGAFT RFISKAQTLDEVLEPQVHYTSHNHLQI
Specific function: Degradation Of External Udp-Glucose To Uridine Monophosphate And Glucose-1-Phosphate, Which Can Then Be Used By The Cell. [C]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Homo sapiens, GI4505467, Length=594, Percent_Identity=25.2525252525253, Blast_Score=144, Evalue=3e-34, Organism=Drosophila melanogaster, GI28573524, Length=551, Percent_Identity=28.1306715063521, Blast_Score=174, Evalue=2e-43, Organism=Drosophila melanogaster, GI19922444, Length=545, Percent_Identity=25.8715596330275, Blast_Score=162, Evalue=8e-40, Organism=Drosophila melanogaster, GI24641187, Length=543, Percent_Identity=25.5985267034991, Blast_Score=156, Evalue=3e-38, Organism=Drosophila melanogaster, GI19922446, Length=545, Percent_Identity=25.6880733944954, Blast_Score=153, Evalue=4e-37, Organism=Drosophila melanogaster, GI24654424, Length=545, Percent_Identity=25.6880733944954, Blast_Score=153, Evalue=4e-37, Organism=Drosophila melanogaster, GI221329836, Length=541, Percent_Identity=25.3234750462107, Blast_Score=149, Evalue=4e-36,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR004843 - InterPro: IPR006420 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 65373; Mature: 65242
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAQSTIAQYKLKLAHINDTHSHFDANRIQFTIYEQQKELTLYSHTGGYARIAYQLKQA CCCHHHHHHHHEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEHHHHHHHH KLAAKDNQQSFLFLHGGDSFQGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAGNEPV HHHCCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCCCHH LDFLNDIHFPLLAGNMDLSQECQQKCARLANHPKLLDLEPLTQTAKVLLKPLQDKQVAII HHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCEEEEE GITLDQMTEIAQPDDDTHFVSAIETARRSVAKLKADGIDHIVVLSHLGLDQDRVLAKEVD EEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCC GISVIVGGHSHTLQGDFRALGLSNMPYGERINNTAILHAGKYAETLGIADITFDANGNVT CEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCEEEEECCCHHHHCCEEEEEECCCCCEE SLSGGNYFMLDEQFILQASDDVSPQDYLNVRQTLKSHPLILWDDEDSQVQARILQKYRPS EECCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCC LDALNNKILGFVPRNLVHTRLPSKALPHGSEIAPWVSRSMYQETRELGIQVDFALHNAGG HHHHCCCEEEECCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCC VRQSLDKGELSLAEVLGRILPFDIPLVTYEIQGQYLFQILESAINGATNNSVIGTGAGSF HHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCEEECCCCCC PYTYGLKYFYDGRLALGQRIIKLEVLHIEDGKQLWLPLDADAYYTGVSSSYTASGKEGYF CCEECCEEEECCCHHHCCEEEEEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCC PILQANWQRDVEGLSLPGAFTRFISKAQTLDEVLEPQVHYTSHNHLQI EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC >Mature Secondary Structure TTAQSTIAQYKLKLAHINDTHSHFDANRIQFTIYEQQKELTLYSHTGGYARIAYQLKQA CCHHHHHHHHEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEHHHHHHHH KLAAKDNQQSFLFLHGGDSFQGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAGNEPV HHHCCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCCCHH LDFLNDIHFPLLAGNMDLSQECQQKCARLANHPKLLDLEPLTQTAKVLLKPLQDKQVAII HHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCEEEEE GITLDQMTEIAQPDDDTHFVSAIETARRSVAKLKADGIDHIVVLSHLGLDQDRVLAKEVD EEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCC GISVIVGGHSHTLQGDFRALGLSNMPYGERINNTAILHAGKYAETLGIADITFDANGNVT CEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCEEEEECCCHHHHCCEEEEEECCCCCEE SLSGGNYFMLDEQFILQASDDVSPQDYLNVRQTLKSHPLILWDDEDSQVQARILQKYRPS EECCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCC LDALNNKILGFVPRNLVHTRLPSKALPHGSEIAPWVSRSMYQETRELGIQVDFALHNAGG HHHHCCCEEEECCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCC VRQSLDKGELSLAEVLGRILPFDIPLVTYEIQGQYLFQILESAINGATNNSVIGTGAGSF HHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCEEECCCCCC PYTYGLKYFYDGRLALGQRIIKLEVLHIEDGKQLWLPLDADAYYTGVSSSYTASGKEGYF CCEECCEEEECCCHHHCCEEEEEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCC PILQANWQRDVEGLSLPGAFTRFISKAQTLDEVLEPQVHYTSHNHLQI EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]