| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623242
Identifier: 167623242
GI number: 167623242
Start: 1591610
End: 1592056
Strand: Direct
Name: 167623242
Synonym: Shal_1309
Alternate gene names: NA
Gene position: 1591610-1592056 (Clockwise)
Preceding gene: 167623241
Following gene: 167623243
Centisome position: 30.45
GC content: 46.53
Gene sequence:
>447_bases ATGAATGCTCTAAAGCAAACAGCGCATGAATCTGTGCCCAGAATAGAAGCCGACTTACATATTGAAAAATCTGCCGCTAA CGATATTGCATCCCCGTCTAGTCAGCAGAGTATTGCCGCTGTGCGTTCAATGCTTGGGCGCAACCGCGCGGCCAGTCTAT ACAGCGGCCTTTCAAAGCAAAAAAAAGCCATCATTTTATTTGGCGCCCGCCTAAAACCTAGTACCCACATTCATATTCCG CTTGAAAACATGACGTTTGATGAACAAGAGGCGGTGCGAATGTCGATGCTAGCCATTCGTGAATTAGTAAAAGAGATCAG CTCGGTTGGGCTGGGACGAGAGAAATTCATTACCGCAAAAGTTGAGACTCCAACAGAAGACAGTTTTTCAGATCTGGCAG GTGAGCTGGCAAGTAATCAGGCCGCAATGGCTCAAGTTAGCTATTAA
Upstream 100 bases:
>100_bases TGACGTAGAGCAGAAGTTTCAAGCCATTCCGGTACTCACTGTTGCGAGCGATGCAATGCAAGCCATGCCCATGCCAGGGC TGATGTAGAAGGGGAATTAT
Downstream 100 bases:
>100_bases CAGGCACAAAAAAAGCCACTTCCGTTACAGCGGATGTGGCCGTGTCGACTCAATCAATAGATTTTCAAGGATTTACATTA TGAAACCGACAAAACAGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 148; Mature: 148
Protein sequence:
>148_residues MNALKQTAHESVPRIEADLHIEKSAANDIASPSSQQSIAAVRSMLGRNRAASLYSGLSKQKKAIILFGARLKPSTHIHIP LENMTFDEQEAVRMSMLAIRELVKEISSVGLGREKFITAKVETPTEDSFSDLAGELASNQAAMAQVSY
Sequences:
>Translated_148_residues MNALKQTAHESVPRIEADLHIEKSAANDIASPSSQQSIAAVRSMLGRNRAASLYSGLSKQKKAIILFGARLKPSTHIHIP LENMTFDEQEAVRMSMLAIRELVKEISSVGLGREKFITAKVETPTEDSFSDLAGELASNQAAMAQVSY >Mature_148_residues MNALKQTAHESVPRIEADLHIEKSAANDIASPSSQQSIAAVRSMLGRNRAASLYSGLSKQKKAIILFGARLKPSTHIHIP LENMTFDEQEAVRMSMLAIRELVKEISSVGLGREKFITAKVETPTEDSFSDLAGELASNQAAMAQVSY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16098; Mature: 16098
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALKQTAHESVPRIEADLHIEKSAANDIASPSSQQSIAAVRSMLGRNRAASLYSGLSKQ CCHHHHHHHHCCCCCCHHEEECHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC KKAIILFGARLKPSTHIHIPLENMTFDEQEAVRMSMLAIRELVKEISSVGLGREKFITAK CCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEE VETPTEDSFSDLAGELASNQAAMAQVSY ECCCCCCCHHHHHHHHHCCHHHHHEECC >Mature Secondary Structure MNALKQTAHESVPRIEADLHIEKSAANDIASPSSQQSIAAVRSMLGRNRAASLYSGLSKQ CCHHHHHHHHCCCCCCHHEEECHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC KKAIILFGARLKPSTHIHIPLENMTFDEQEAVRMSMLAIRELVKEISSVGLGREKFITAK CCEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEE VETPTEDSFSDLAGELASNQAAMAQVSY ECCCCCCCHHHHHHHHHCCHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA