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The map label for this gene is ybcM [C]

Identifier: 167623218

GI number: 167623218

Start: 1565690

End: 1566499

Strand: Direct

Name: ybcM [C]

Synonym: Shal_1284

Alternate gene names: 167623218

Gene position: 1565690-1566499 (Clockwise)

Preceding gene: 167623217

Following gene: 167623219

Centisome position: 29.95

GC content: 45.19

Gene sequence:

>810_bases
TTGGCATCATTGGTTCAGATTGACCGTTTCTATGGTCAGAAATCACAGCCTTTACGGAATGTACCTGTGTATACGCCGAG
TATTATTGCGGTGACATCTGGAGTGAAAACTCTGCTTTGGCAGGGGGAAACGCTAACATTCGACCGTAACCATTGGCTAC
TTGCCTCTTCCGCTCAGGAGCTTACCTTTGTTAATGAGCCTTATCAGAACAGGTTTCAGTCAGTTCAGCTCTCATTTTTA
TCGCAGCCATCTGAAAGGGTTTTAAAGCAGATGGCTAAACCTGAAACCACCTCAACACCGCTGCTTTCGCCACCGACTCT
AACCGTGAGTGATAGTCTTAACTTTGCGTTTACACAACTTGTCGCTATGTCAGAACAAAGATTAAGCCCAGCAGTGCAGC
AATGCTATCTAGATGCCTTCTATCTGCATCTCAATGAGTTAGGAGTGTTATCAAAACTTTTTGAGAGTGATGTACTTACA
CTAAGGGAAAAGGTGAGCCGTTACTTGTCGGCTGACCCATCCGCCAGCCATACGATTGAGCTGACTTGCTCTCACTTCGC
CATGAGCCAAGCAACCTTAATACGGCGGTTAAACAAAGAAGGAAGCTCATTTAGAGTGATCCTCGCAGGGGTGAGGATGC
TGCATGCTATCGGTATCGTGCAGTCCTTAAGCGCTCGTAATGGTGTGCCACTCTCACAATTAGAGTTAGCAATCCGCTGT
GGTTATCAATCTGAAGCTCGATTTAGCCAACGTTTCAAAAGTCAGTTTGGAATTTCATTGAAACAATATATGAAAACGAT
CACTGGCTGA

Upstream 100 bases:

>100_bases
CCTCAATAAAATGGCACTAGATAAGGCGGTATTGACTGCCACTTATGTACGTTAGTCATTAAAGTATTTAGCTAAATATG
ATCGTTAGAGGAGAGTAAGA

Downstream 100 bases:

>100_bases
AAATCCATTAAAACAATGACCTAATTTCACCCCATTCAAAATGGGCTTTATTTAGCCATAAATATAGCTCACAACTCTAG
TGCTAGTATGAATATCGACT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC/XylS Family Transcriptional Regulator; HTH-Type Transcriptional Regulator AraC Family; Transcriptional Regulator AraC/XylS Family; AraC Family Transcription Regulator Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulatory Protein AraC-Like Protein; AraC/XylS Family Transcription Factor

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MASLVQIDRFYGQKSQPLRNVPVYTPSIIAVTSGVKTLLWQGETLTFDRNHWLLASSAQELTFVNEPYQNRFQSVQLSFL
SQPSERVLKQMAKPETTSTPLLSPPTLTVSDSLNFAFTQLVAMSEQRLSPAVQQCYLDAFYLHLNELGVLSKLFESDVLT
LREKVSRYLSADPSASHTIELTCSHFAMSQATLIRRLNKEGSSFRVILAGVRMLHAIGIVQSLSARNGVPLSQLELAIRC
GYQSEARFSQRFKSQFGISLKQYMKTITG

Sequences:

>Translated_269_residues
MASLVQIDRFYGQKSQPLRNVPVYTPSIIAVTSGVKTLLWQGETLTFDRNHWLLASSAQELTFVNEPYQNRFQSVQLSFL
SQPSERVLKQMAKPETTSTPLLSPPTLTVSDSLNFAFTQLVAMSEQRLSPAVQQCYLDAFYLHLNELGVLSKLFESDVLT
LREKVSRYLSADPSASHTIELTCSHFAMSQATLIRRLNKEGSSFRVILAGVRMLHAIGIVQSLSARNGVPLSQLELAIRC
GYQSEARFSQRFKSQFGISLKQYMKTITG
>Mature_268_residues
ASLVQIDRFYGQKSQPLRNVPVYTPSIIAVTSGVKTLLWQGETLTFDRNHWLLASSAQELTFVNEPYQNRFQSVQLSFLS
QPSERVLKQMAKPETTSTPLLSPPTLTVSDSLNFAFTQLVAMSEQRLSPAVQQCYLDAFYLHLNELGVLSKLFESDVLTL
REKVSRYLSADPSASHTIELTCSHFAMSQATLIRRLNKEGSSFRVILAGVRMLHAIGIVQSLSARNGVPLSQLELAIRCG
YQSEARFSQRFKSQFGISLKQYMKTITG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786758, Length=263, Percent_Identity=23.9543726235741, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30161; Mature: 30030

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLVQIDRFYGQKSQPLRNVPVYTPSIIAVTSGVKTLLWQGETLTFDRNHWLLASSAQE
CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCH
LTFVNEPYQNRFQSVQLSFLSQPSERVLKQMAKPETTSTPLLSPPTLTVSDSLNFAFTQL
HEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHH
VAMSEQRLSPAVQQCYLDAFYLHLNELGVLSKLFESDVLTLREKVSRYLSADPSASHTIE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
LTCSHFAMSQATLIRRLNKEGSSFRVILAGVRMLHAIGIVQSLSARNGVPLSQLELAIRC
EEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GYQSEARFSQRFKSQFGISLKQYMKTITG
CCCHHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
ASLVQIDRFYGQKSQPLRNVPVYTPSIIAVTSGVKTLLWQGETLTFDRNHWLLASSAQE
CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCH
LTFVNEPYQNRFQSVQLSFLSQPSERVLKQMAKPETTSTPLLSPPTLTVSDSLNFAFTQL
HEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHH
VAMSEQRLSPAVQQCYLDAFYLHLNELGVLSKLFESDVLTLREKVSRYLSADPSASHTIE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
LTCSHFAMSQATLIRRLNKEGSSFRVILAGVRMLHAIGIVQSLSARNGVPLSQLELAIRC
EEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GYQSEARFSQRFKSQFGISLKQYMKTITG
CCCHHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA