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The map label for this gene is algU [H]

Identifier: 167623180

GI number: 167623180

Start: 1518787

End: 1519404

Strand: Direct

Name: algU [H]

Synonym: Shal_1246

Alternate gene names: 167623180

Gene position: 1518787-1519404 (Clockwise)

Preceding gene: 167623179

Following gene: 167623181

Centisome position: 29.06

GC content: 45.31

Gene sequence:

>618_bases
GTGGAGCAACCCTTGCCCTCAGTCGAATCGTCCAATGAGGTCGATGTCGATCAAGCCTTGATGTTGCAATATGCAGCCGG
CAGTGCTCGAGCGTTTGAGTTACTTTACCGAAAGCACAAAGGTCCGCTATACCGCTACTTCGTTCGTCAAATCTATGATC
AACAGTTGGCAGAAGATCTTTATCAAGAGACTTGGAGCCGAGTGATAAAGGCAGCCAGCAGTTACGAAACCAGCGCCAAA
TTTACCACTTGGCTGTATCGTATCGCTCATAACCTTATTATCGATCACGTAAGAGCCGTTAAGCCGGTAAATAATTTTAG
TGAGGTGTTTGAACCGGAGCAAGACGCGGAGGCTCAACTCAGTAACGATGATTTTAATCCTGAAGAACAGATGTTAGATA
AACAAAAGTCGACTCTGCTGAAAGGCTGTGTGGCGAATTTACCACAAGTGCAGAAAGAGGCATTTCTGCTCAATATCGAG
ATGGGTTTTACCGCAGCGATTATCGCCGATATAGCCGGAGTAACTTTAGAAGCGACAAAGAGTCGAATTCGTTATGCCTA
TAAGGGACTTAAAGATTGCGTAGACTTGAAATGGCAAGGAGCTGAGCATGACAGATAA

Upstream 100 bases:

>100_bases
TTCCCCAAAGAGGCAGATGTAGAGACGGGGATTAAACTAGACAAAACTTAGTGCTCAATGCAGACTTAATAATTAGATAA
TTTTAGTTTAGGAAAATACC

Downstream 100 bases:

>100_bases
AGAGCATGAAGCCGTTAAAGCTGAGATTAAGTCGCTTTATCAAAAAATCGATAAGGAGCAGCCTTCAACTGAGCTTGATG
AGCAGATCCTCAATATGGCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MEQPLPSVESSNEVDVDQALMLQYAAGSARAFELLYRKHKGPLYRYFVRQIYDQQLAEDLYQETWSRVIKAASSYETSAK
FTTWLYRIAHNLIIDHVRAVKPVNNFSEVFEPEQDAEAQLSNDDFNPEEQMLDKQKSTLLKGCVANLPQVQKEAFLLNIE
MGFTAAIIADIAGVTLEATKSRIRYAYKGLKDCVDLKWQGAEHDR

Sequences:

>Translated_205_residues
MEQPLPSVESSNEVDVDQALMLQYAAGSARAFELLYRKHKGPLYRYFVRQIYDQQLAEDLYQETWSRVIKAASSYETSAK
FTTWLYRIAHNLIIDHVRAVKPVNNFSEVFEPEQDAEAQLSNDDFNPEEQMLDKQKSTLLKGCVANLPQVQKEAFLLNIE
MGFTAAIIADIAGVTLEATKSRIRYAYKGLKDCVDLKWQGAEHDR
>Mature_205_residues
MEQPLPSVESSNEVDVDQALMLQYAAGSARAFELLYRKHKGPLYRYFVRQIYDQQLAEDLYQETWSRVIKAASSYETSAK
FTTWLYRIAHNLIIDHVRAVKPVNNFSEVFEPEQDAEAQLSNDDFNPEEQMLDKQKSTLLKGCVANLPQVQKEAFLLNIE
MGFTAAIIADIAGVTLEATKSRIRYAYKGLKDCVDLKWQGAEHDR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23472; Mature: 23472

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQPLPSVESSNEVDVDQALMLQYAAGSARAFELLYRKHKGPLYRYFVRQIYDQQLAEDL
CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YQETWSRVIKAASSYETSAKFTTWLYRIAHNLIIDHVRAVKPVNNFSEVFEPEQDAEAQL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHC
SNDDFNPEEQMLDKQKSTLLKGCVANLPQVQKEAFLLNIEMGFTAAIIADIAGVTLEATK
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEECCCHHHHHHHHHHCCHHHHHH
SRIRYAYKGLKDCVDLKWQGAEHDR
HHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MEQPLPSVESSNEVDVDQALMLQYAAGSARAFELLYRKHKGPLYRYFVRQIYDQQLAEDL
CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YQETWSRVIKAASSYETSAKFTTWLYRIAHNLIIDHVRAVKPVNNFSEVFEPEQDAEAQL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHC
SNDDFNPEEQMLDKQKSTLLKGCVANLPQVQKEAFLLNIEMGFTAAIIADIAGVTLEATK
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEECCCHHHHHHHHHHCCHHHHHH
SRIRYAYKGLKDCVDLKWQGAEHDR
HHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]