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The map label for this gene is 167623124

Identifier: 167623124

GI number: 167623124

Start: 1442059

End: 1443582

Strand: Direct

Name: 167623124

Synonym: Shal_1190

Alternate gene names: NA

Gene position: 1442059-1443582 (Clockwise)

Preceding gene: 167623121

Following gene: 167623128

Centisome position: 27.59

GC content: 44.42

Gene sequence:

>1524_bases
ATGATCATCATGGATTCTCGCTCTCAACTTATCGTTGATGTGATCGCCAAAGTCACCCAAGGTAAGATCAGCATCAACAG
TGCCTCTCAGCTCCTCAATAAATCCCGTCGAACAATTGAACGTTACCTCAGTCGTTATCGGGCTGAAGGTATCCGCTTTA
TCGTGCATGGTAATAAAGGTCGTGCACCCATCAATAGAACGCCTGAGTCATTGAAAAAACAGGTGCTACACCTCATTCAA
ACCAAGTATTACGACTTCAATTTACAGCATCTTGCCGAATTGCTCGCTGAAAATGAAGGACTGAGCATTAAGCGTGAAAC
ATTGCGAGGTTGGGCTCACGAGATTAAACATGTTAAACGAGCCAAACGTCGACGCAGTCAAGTAAGAAAGTACAGAGAGC
GTATGGAATCACCTGGGCTAATGCTGCAAATGGATGGTAGCCCTCATCGTTGGTTTGGTGATAGTCGATCGTGTTTGATT
GCCATTATCGATGACGCAACGAGTGATATCCATGCTGAGTTTTACCCTTCAGAAACGACGGAAGGTTGCATGAAAGTCAT
GAAGGCTTACATCGAGAAGCGAGGACTCTTTAAGACGCTTTACGTCGACCGAGCAGGTATTTTTGGTGGTCCCAAGCGCT
GTCACTTCTCTCAGATGCAACGTGCTTGTGAGGAGTTAGGGATCGAAATCATCTTCGCCAATTCTCCACAAGGAAAAGGT
CGAGTTGAACGCTGTTTTGATACGTTCCAAGACCGACTGGTTCCTGAGCTTAGGCTTCACAATATCACCGATATGCACAG
TGCGAATGAGTATCTTCAGAAGGTGTTTATCCCCATATATTGGCAACAGAAAATAACCGTGAAAGCGAAAAGTAAGTTGT
CAGCCTTCAAAGCCGTTCCTGAGCATATCGACTTAGATACTATCTGTGTGTACAAGGAATATCGGAAGGTACGACGAGAC
CATACCTTTAGTTATAACAACAAGATGTACGTTATCGACTCGCCAATTCGATATTCTATCGTCAATCAAAAGCTTGAAAT
TCGCAGTCAGTTTGATGGGACATTTTCGGTTTATTTTGGCCATAGAAAACTTCATATAACAGAGCTAGAAGAACCACCAA
GAGGCTCTGAGTTCGGAATGGAGGTTCAGCGTAAGTTGGATGTGATCGAGCTAGCCCAAACCTTAGGTAGCGTGACCAAA
GCTGCTCAAGTTGCGGGGTGCTCTCGGCAAAGTATCTATACCTATCAAAAGGTGCTGGAAGAAGAGGGTGTGCTGGGGCT
TAAACGTATCAACAAGCCCTTAAAAAGAAACAAAAATCGCATTCCTCAGGTGACAGAAGAGAAAATCGTCAAGCTGACAC
TCAACAATCCATATCGTACTTCCCTTCAACTAATGACTGAGCTTAAAAGGGATCACAACATCACAGTAAGCAGTGCCACG
ATCCGAAATATCTGGAAGCGTGAGGTGATGAATACCAGAGAGCTTCGAGTTAAACGAGCTGCATCCCTAAATAAGGAAAT
CTAG

Upstream 100 bases:

>100_bases
ACCGATTTTGTCGGTTTGCTAATTACCAAGGGAAAATGACGGATCCATTTTTATACATAATCCTTTAATAGTTTTAATTA
CTATTTAGGGGTTATTAAGG

Downstream 100 bases:

>100_bases
CATGATAGGCTAGACTATATAGTGAACGACAAAGTCGCTTGGCTTTTATTCCGTCAGGCTCCCTCGGTAATCACAGTTTT
AGCCATAACTCTAAATATTA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 507

Protein sequence:

>507_residues
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKGRAPINRTPESLKKQVLHLIQ
TKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKRAKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLI
AIIDDATSDIHAEFYPSETTEGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
RVERCFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVPEHIDLDTICVYKEYRKVRRD
HTFSYNNKMYVIDSPIRYSIVNQKLEIRSQFDGTFSVYFGHRKLHITELEEPPRGSEFGMEVQRKLDVIELAQTLGSVTK
AAQVAGCSRQSIYTYQKVLEEEGVLGLKRINKPLKRNKNRIPQVTEEKIVKLTLNNPYRTSLQLMTELKRDHNITVSSAT
IRNIWKREVMNTRELRVKRAASLNKEI

Sequences:

>Translated_507_residues
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKGRAPINRTPESLKKQVLHLIQ
TKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKRAKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLI
AIIDDATSDIHAEFYPSETTEGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
RVERCFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVPEHIDLDTICVYKEYRKVRRD
HTFSYNNKMYVIDSPIRYSIVNQKLEIRSQFDGTFSVYFGHRKLHITELEEPPRGSEFGMEVQRKLDVIELAQTLGSVTK
AAQVAGCSRQSIYTYQKVLEEEGVLGLKRINKPLKRNKNRIPQVTEEKIVKLTLNNPYRTSLQLMTELKRDHNITVSSAT
IRNIWKREVMNTRELRVKRAASLNKEI
>Mature_507_residues
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKGRAPINRTPESLKKQVLHLIQ
TKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKRAKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLI
AIIDDATSDIHAEFYPSETTEGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
RVERCFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVPEHIDLDTICVYKEYRKVRRD
HTFSYNNKMYVIDSPIRYSIVNQKLEIRSQFDGTFSVYFGHRKLHITELEEPPRGSEFGMEVQRKLDVIELAQTLGSVTK
AAQVAGCSRQSIYTYQKVLEEEGVLGLKRINKPLKRNKNRIPQVTEEKIVKLTLNNPYRTSLQLMTELKRDHNITVSSAT
IRNIWKREVMNTRELRVKRAASLNKEI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 59036; Mature: 59036

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKG
CEEECCCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
RAPINRTPESLKKQVLHLIQTKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKR
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
AKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLIAIIDDATSDIHAEFYPSETT
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCH
EGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCC
RVERCFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVP
HHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCEEEECCEEEEHHHHHHHHHHHCC
EHIDLDTICVYKEYRKVRRDHTFSYNNKMYVIDSPIRYSIVNQKLEIRSQFDGTFSVYFG
CCCCCCHHHHHHHHHHHHHCCCEEECCEEEEEECCCEEHHHHHHHHHHHHCCCEEEEEEC
HRKLHITELEEPPRGSEFGMEVQRKLDVIELAQTLGSVTKAAQVAGCSRQSIYTYQKVLE
CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EEGVLGLKRINKPLKRNKNRIPQVTEEKIVKLTLNNPYRTSLQLMTELKRDHNITVSSAT
HCCCEEHHHCCHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEHHH
IRNIWKREVMNTRELRVKRAASLNKEI
HHHHHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIIMDSRSQLIVDVIAKVTQGKISINSASQLLNKSRRTIERYLSRYRAEGIRFIVHGNKG
CEEECCCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
RAPINRTPESLKKQVLHLIQTKYYDFNLQHLAELLAENEGLSIKRETLRGWAHEIKHVKR
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
AKRRRSQVRKYRERMESPGLMLQMDGSPHRWFGDSRSCLIAIIDDATSDIHAEFYPSETT
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCH
EGCMKVMKAYIEKRGLFKTLYVDRAGIFGGPKRCHFSQMQRACEELGIEIIFANSPQGKG
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCC
RVERCFDTFQDRLVPELRLHNITDMHSANEYLQKVFIPIYWQQKITVKAKSKLSAFKAVP
HHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCEEEECCEEEEHHHHHHHHHHHCC
EHIDLDTICVYKEYRKVRRDHTFSYNNKMYVIDSPIRYSIVNQKLEIRSQFDGTFSVYFG
CCCCCCHHHHHHHHHHHHHCCCEEECCEEEEEECCCEEHHHHHHHHHHHHCCCEEEEEEC
HRKLHITELEEPPRGSEFGMEVQRKLDVIELAQTLGSVTKAAQVAGCSRQSIYTYQKVLE
CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EEGVLGLKRINKPLKRNKNRIPQVTEEKIVKLTLNNPYRTSLQLMTELKRDHNITVSSAT
HCCCEEHHHCCHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEHHH
IRNIWKREVMNTRELRVKRAASLNKEI
HHHHHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]