| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is nag096 [H]
Identifier: 167623082
GI number: 167623082
Start: 1394433
End: 1397138
Strand: Direct
Name: nag096 [H]
Synonym: Shal_1148
Alternate gene names: 167623082
Gene position: 1394433-1397138 (Clockwise)
Preceding gene: 167623080
Following gene: 167623083
Centisome position: 26.68
GC content: 45.93
Gene sequence:
>2706_bases ATGAAGATTAAAGTGATAGTTTCAGCGGTAGCACTCGCGTTGTCTGTTGGTGCTTGTTCTAAGCAGAATGAATCTGAAGA GACTGCTAGCGTTATCTCCCCCACTGAGCAAAGCACACTTGTTAGTCAGCCTGTAAACGGCTCTGACTTTACTCAAGCTT CATTGAACCAAATTGGCGAGACGCTCGATATTAGCTATCGCGTGGTGACTAACGTTCCCGATGGCCATTGTGACCAAAAT ACGGTAGATGGCCGCTGTTTCTTGGCTGAAATAGACCTGACTTCTCAAGTCGATATAGACAATAAAGATTGGGCTATCTA CTACTCGCAAATGCGCCCAATTCAAAGCATCGTGGGTGATGAGTTCACTATCACTCGTATTCAAGGCGATCTACACAAAA TAGCTCCGGCAGCGGGCTTTAGTGGTATTAAAAAGGGCCAAACTAAAACGATTCAATTTCGCGGTGAGCTGTGGCAGTTA TCTGAAACAGATGCCATGCCTAACTACTATATCGTTGCCGATGATCTAGAACCCGTCATCATTGGCAGTACTCAGGTAGC AGTTGACTCGGAAACTGGCATGGAAGTACGCCCCTATGTCAGTGCTTTTACCGACAGCGATACCCAATATAAACGCCGTG AAACCGATAAGCTTGAGTGGGCAACTACTGAGGTATTATATCGTAATAATCTCAACACGCCTGTAGATGCCAGCTTAGCA GAGAATACGATTTTACCAACACCATCAAAGGTTTCATTGAAAATAGATGCGAAACCTGTATCACTAAAAGATGGGCTAAA GCTTGAGCTTAATGATGTCAGTCTAGAGGCCGTTGATGCCGCGCTGCAGCGTTTAGCACGTATTGGTGTTGGGCAAAGTG ATGCTGAGATTGGTCGTGGAATTAGCACTGCACTATTACCCTTAACCGCTCCTAGCGCAAAGGGCGAGTATCGTCTTGAT ATCTCAAGCAATGGGATTAAAGTTTTTGCCGCAGATGATGCGGGCTTCTCCTATGGTTTAGCCTCACTGGCAGCATTGGT TGATGTTGATACATTAACCGTTAATCCGCTGCTGGTGGAAGATGCGCCGCGCTATGATTTTCGAGGAATGCATATCGATG TATCGCGCAACTTCCATAGCAAGCAGCTAGTTTTAGATCTATTAGATCAGATGGCGGCCTATAAGCTCAATAAGTTACAT CTGCATATGGCGGATGATGAAGGTTGGCGTTTAGAGATAGCAGACTTACCTGAGCTAACAGAAGTCGGTAGCAAGCGCTG TCATGATCTTAATGAAGATACCTGTCTACTACCTCAGTTAGGAAGTGGTCCCTTTAGCAATACTAAGGTCAATGGTTACT ATAGCAAAGCCGATTATATCGAGATCTTACAGTATGCGGCAGCGAGACAAATACAGGTGATCCCATCGATGGATATGCCG GGGCATTCCCGCGCGGCAATCAAGTCGATGGAAGCGAGGTATCGTAAGCTAATGGCGCAGGATAAAGCTGCAGAAGCAAA TGAATACCTGTTATCAGATAGCCAAGATAAAACGGTTTATTCATCGATTCAGTACTATAACGATAACACCTTGAATGTGT GTATGGAGTCGACCTTTACCTTTATCGATAAGGTTATCGATGAAATTGCTAAGATGCACCAACAAGCGGGTGTGCCGCTT AATCTTTATCATATCGGCGCCGATGAAACCGCTGGGGCTTGGTTAGAGTCGCCTGTATGTAAGGCCTTTATCGCCAATAA CGATAAAGGCGTGACAAATATGCAAGATCTTGGCGCCTACTTTATCGAGAGAACGTCTAAGTTATTAGCGGCCAAAGGTA TTGAAGCGGCAGGGTGGAGCGATGGCATGAGCCATACTCGCCCTGAAAATATGCCCAAGCAGGTGCAATCAAATATTTGG GACGTGGTTGCTCATGGTGGACATAAACGCGCCCATACTCAGGCTAATCTTAATTGGCAAGCGGTATTAGGCCAGCCTGA AGTCCTCTATTTTGACTTTCCCTATGAGGCCGATCCAAAAGAGCACGGCTATTACTGGGCGAGCCGTAATACCAATTCGC AAAAAATCCACAGCTTTATGGCGGGTAACTTACCAGCAAACGCCGAGCAATGGACTGATATCGAAGCGCTGCCGTTTGAA GCCGACGATATGCTAAAAAAAGATGAAGCGGGTAAAATCATTAGTGGGCCACTAAAAGCATCGATTCGTTTTGCAGGTAT TCAAGGCCAACTATGGAGCGAAACAGTGCGCAGTGATGATGTGGCTGAATACATGATGTTTCCTCGTCTGATGATGCTAG CAGAGCGTGCATGGCACAAGCCAGAGTGGGAAGTGCCATATCAATACCAAGGTGCGGTTTATAATCAGCAAAGTGGTTAT TTCACGAAAGAGATGCGTCAAGCACAAGCCAAAGATTGGCACCGCGTGGCAAACACCTTAGGTGCTAAAGAGCTATTAAA GCTAGATAAAGCAGGTATTGCCTATCGAGTACCGACACCCGGTGCTGTCATAAATGACGGTAAATTGTTTGCCAATGTTA TTTTCCCAGGACTTAGCATTGAATACCGTGATGCTAAAGGACAGTGGCAGGCATATTCCGATGGCGTAACGGTTACCGCG CCTGTTGAGGTGCGTGTGATTGCGGCTGATGGCAAGCGTAAAGGGCGCATTTTAGTTGTTAATTAA
Upstream 100 bases:
>100_bases AGTAATAACGAGTTCTCGTTAATTTCCATCAGGGGGGGAATAACGAGGCAGAGCTTGAGCATTTCACCTTTAAATAACAA TAGAAATCATAGGGAATGTA
Downstream 100 bases:
>100_bases CAATTGCTTAATAGGTGTGTTAGTTGTACATGTAAGAAGCCGTTAAGCTTGAACGTAGCAGTGCTAAAGGCATTGCTACG TTTTTTTTGCTTTTAATGAG
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-GlcNAcase; Beta-N-acetylhexosaminidase; Beta-NAHase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 901; Mature: 901
Protein sequence:
>901_residues MKIKVIVSAVALALSVGACSKQNESEETASVISPTEQSTLVSQPVNGSDFTQASLNQIGETLDISYRVVTNVPDGHCDQN TVDGRCFLAEIDLTSQVDIDNKDWAIYYSQMRPIQSIVGDEFTITRIQGDLHKIAPAAGFSGIKKGQTKTIQFRGELWQL SETDAMPNYYIVADDLEPVIIGSTQVAVDSETGMEVRPYVSAFTDSDTQYKRRETDKLEWATTEVLYRNNLNTPVDASLA ENTILPTPSKVSLKIDAKPVSLKDGLKLELNDVSLEAVDAALQRLARIGVGQSDAEIGRGISTALLPLTAPSAKGEYRLD ISSNGIKVFAADDAGFSYGLASLAALVDVDTLTVNPLLVEDAPRYDFRGMHIDVSRNFHSKQLVLDLLDQMAAYKLNKLH LHMADDEGWRLEIADLPELTEVGSKRCHDLNEDTCLLPQLGSGPFSNTKVNGYYSKADYIEILQYAAARQIQVIPSMDMP GHSRAAIKSMEARYRKLMAQDKAAEANEYLLSDSQDKTVYSSIQYYNDNTLNVCMESTFTFIDKVIDEIAKMHQQAGVPL NLYHIGADETAGAWLESPVCKAFIANNDKGVTNMQDLGAYFIERTSKLLAAKGIEAAGWSDGMSHTRPENMPKQVQSNIW DVVAHGGHKRAHTQANLNWQAVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSQKIHSFMAGNLPANAEQWTDIEALPFE ADDMLKKDEAGKIISGPLKASIRFAGIQGQLWSETVRSDDVAEYMMFPRLMMLAERAWHKPEWEVPYQYQGAVYNQQSGY FTKEMRQAQAKDWHRVANTLGAKELLKLDKAGIAYRVPTPGAVINDGKLFANVIFPGLSIEYRDAKGQWQAYSDGVTVTA PVEVRVIAADGKRKGRILVVN
Sequences:
>Translated_901_residues MKIKVIVSAVALALSVGACSKQNESEETASVISPTEQSTLVSQPVNGSDFTQASLNQIGETLDISYRVVTNVPDGHCDQN TVDGRCFLAEIDLTSQVDIDNKDWAIYYSQMRPIQSIVGDEFTITRIQGDLHKIAPAAGFSGIKKGQTKTIQFRGELWQL SETDAMPNYYIVADDLEPVIIGSTQVAVDSETGMEVRPYVSAFTDSDTQYKRRETDKLEWATTEVLYRNNLNTPVDASLA ENTILPTPSKVSLKIDAKPVSLKDGLKLELNDVSLEAVDAALQRLARIGVGQSDAEIGRGISTALLPLTAPSAKGEYRLD ISSNGIKVFAADDAGFSYGLASLAALVDVDTLTVNPLLVEDAPRYDFRGMHIDVSRNFHSKQLVLDLLDQMAAYKLNKLH LHMADDEGWRLEIADLPELTEVGSKRCHDLNEDTCLLPQLGSGPFSNTKVNGYYSKADYIEILQYAAARQIQVIPSMDMP GHSRAAIKSMEARYRKLMAQDKAAEANEYLLSDSQDKTVYSSIQYYNDNTLNVCMESTFTFIDKVIDEIAKMHQQAGVPL NLYHIGADETAGAWLESPVCKAFIANNDKGVTNMQDLGAYFIERTSKLLAAKGIEAAGWSDGMSHTRPENMPKQVQSNIW DVVAHGGHKRAHTQANLNWQAVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSQKIHSFMAGNLPANAEQWTDIEALPFE ADDMLKKDEAGKIISGPLKASIRFAGIQGQLWSETVRSDDVAEYMMFPRLMMLAERAWHKPEWEVPYQYQGAVYNQQSGY FTKEMRQAQAKDWHRVANTLGAKELLKLDKAGIAYRVPTPGAVINDGKLFANVIFPGLSIEYRDAKGQWQAYSDGVTVTA PVEVRVIAADGKRKGRILVVN >Mature_901_residues MKIKVIVSAVALALSVGACSKQNESEETASVISPTEQSTLVSQPVNGSDFTQASLNQIGETLDISYRVVTNVPDGHCDQN TVDGRCFLAEIDLTSQVDIDNKDWAIYYSQMRPIQSIVGDEFTITRIQGDLHKIAPAAGFSGIKKGQTKTIQFRGELWQL SETDAMPNYYIVADDLEPVIIGSTQVAVDSETGMEVRPYVSAFTDSDTQYKRRETDKLEWATTEVLYRNNLNTPVDASLA ENTILPTPSKVSLKIDAKPVSLKDGLKLELNDVSLEAVDAALQRLARIGVGQSDAEIGRGISTALLPLTAPSAKGEYRLD ISSNGIKVFAADDAGFSYGLASLAALVDVDTLTVNPLLVEDAPRYDFRGMHIDVSRNFHSKQLVLDLLDQMAAYKLNKLH LHMADDEGWRLEIADLPELTEVGSKRCHDLNEDTCLLPQLGSGPFSNTKVNGYYSKADYIEILQYAAARQIQVIPSMDMP GHSRAAIKSMEARYRKLMAQDKAAEANEYLLSDSQDKTVYSSIQYYNDNTLNVCMESTFTFIDKVIDEIAKMHQQAGVPL NLYHIGADETAGAWLESPVCKAFIANNDKGVTNMQDLGAYFIERTSKLLAAKGIEAAGWSDGMSHTRPENMPKQVQSNIW DVVAHGGHKRAHTQANLNWQAVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSQKIHSFMAGNLPANAEQWTDIEALPFE ADDMLKKDEAGKIISGPLKASIRFAGIQGQLWSETVRSDDVAEYMMFPRLMMLAERAWHKPEWEVPYQYQGAVYNQQSGY FTKEMRQAQAKDWHRVANTLGAKELLKLDKAGIAYRVPTPGAVINDGKLFANVIFPGLSIEYRDAKGQWQAYSDGVTVTA PVEVRVIAADGKRKGRILVVN
Specific function: Unknown
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=287, Percent_Identity=23.6933797909408, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI189181666, Length=309, Percent_Identity=22.6537216828479, Blast_Score=80, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17569815, Length=306, Percent_Identity=25.8169934640523, Blast_Score=83, Evalue=8e-16, Organism=Drosophila melanogaster, GI24657468, Length=177, Percent_Identity=29.9435028248588, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI17647501, Length=177, Percent_Identity=29.9435028248588, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI281365639, Length=177, Percent_Identity=29.9435028248588, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI24657474, Length=177, Percent_Identity=29.9435028248588, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI17933586, Length=132, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR001540 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF03173 CHB_HEX; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 99766; Mature: 99766
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKVIVSAVALALSVGACSKQNESEETASVISPTEQSTLVSQPVNGSDFTQASLNQIGE CEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHCCC TLDISYRVVTNVPDGHCDQNTVDGRCFLAEIDLTSQVDIDNKDWAIYYSQMRPIQSIVGD EEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEECCCCCCEEEEEHHHHHHHHHCCC EFTITRIQGDLHKIAPAAGFSGIKKGQTKTIQFRGELWQLSETDAMPNYYIVADDLEPVI CEEEEEECCHHHHHCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCEEEEECCCCEEE IGSTQVAVDSETGMEVRPYVSAFTDSDTQYKRRETDKLEWATTEVLYRNNLNTPVDASLA ECCEEEEEECCCCCEECCHHHHHCCCCCHHHHHCCCCHHHHHEEEEEECCCCCCCCCHHH ENTILPTPSKVSLKIDAKPVSLKDGLKLELNDVSLEAVDAALQRLARIGVGQSDAEIGRG CCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCC ISTALLPLTAPSAKGEYRLDISSNGIKVFAADDAGFSYGLASLAALVDVDTLTVNPLLVE CCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECEEEEC DAPRYDFRGMHIDVSRNFHSKQLVLDLLDQMAAYKLNKLHLHMADDEGWRLEIADLPELT CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCCCHH EVGSKRCHDLNEDTCLLPQLGSGPFSNTKVNGYYSKADYIEILQYAAARQIQVIPSMDMP HHHHHHHCCCCCCEEECCCCCCCCCCCCEECEEECCHHHHHHHHHHHHCEEEEEECCCCC GHSRAAIKSMEARYRKLMAQDKAAEANEYLLSDSQDKTVYSSIQYYNDNTLNVCMESTFT CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHH FIDKVIDEIAKMHQQAGVPLNLYHIGADETAGAWLESPVCKAFIANNDKGVTNMQDLGAY HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHEEECCCCCCCCHHHHHHH FIERTSKLLAAKGIEAAGWSDGMSHTRPENMPKQVQSNIWDVVAHGGHKRAHTQANLNWQ HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEE AVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSQKIHSFMAGNLPANAEQWTDIEALPFE EEECCCEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHCCCCEECCCC ADDMLKKDEAGKIISGPLKASIRFAGIQGQLWSETVRSDDVAEYMMFPRLMMLAERAWHK HHHHHHHCCCCCEEECCCEEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC PEWEVPYQYQGAVYNQQSGYFTKEMRQAQAKDWHRVANTLGAKELLKLDKAGIAYRVPTP CCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEECCCC GAVINDGKLFANVIFPGLSIEYRDAKGQWQAYSDGVTVTAPVEVRVIAADGKRKGRILVV CCEEECCCEEEEEECCCCEEEEECCCCCCEEECCCEEEEECEEEEEEEECCCCCCEEEEE N C >Mature Secondary Structure MKIKVIVSAVALALSVGACSKQNESEETASVISPTEQSTLVSQPVNGSDFTQASLNQIGE CEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHHHCCC TLDISYRVVTNVPDGHCDQNTVDGRCFLAEIDLTSQVDIDNKDWAIYYSQMRPIQSIVGD EEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEECCCCCCEEEEEHHHHHHHHHCCC EFTITRIQGDLHKIAPAAGFSGIKKGQTKTIQFRGELWQLSETDAMPNYYIVADDLEPVI CEEEEEECCHHHHHCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCEEEEECCCCEEE IGSTQVAVDSETGMEVRPYVSAFTDSDTQYKRRETDKLEWATTEVLYRNNLNTPVDASLA ECCEEEEEECCCCCEECCHHHHHCCCCCHHHHHCCCCHHHHHEEEEEECCCCCCCCCHHH ENTILPTPSKVSLKIDAKPVSLKDGLKLELNDVSLEAVDAALQRLARIGVGQSDAEIGRG CCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHCCC ISTALLPLTAPSAKGEYRLDISSNGIKVFAADDAGFSYGLASLAALVDVDTLTVNPLLVE CCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECEEEEC DAPRYDFRGMHIDVSRNFHSKQLVLDLLDQMAAYKLNKLHLHMADDEGWRLEIADLPELT CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCCCHH EVGSKRCHDLNEDTCLLPQLGSGPFSNTKVNGYYSKADYIEILQYAAARQIQVIPSMDMP HHHHHHHCCCCCCEEECCCCCCCCCCCCEECEEECCHHHHHHHHHHHHCEEEEEECCCCC GHSRAAIKSMEARYRKLMAQDKAAEANEYLLSDSQDKTVYSSIQYYNDNTLNVCMESTFT CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHH FIDKVIDEIAKMHQQAGVPLNLYHIGADETAGAWLESPVCKAFIANNDKGVTNMQDLGAY HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHEEECCCCCCCCHHHHHHH FIERTSKLLAAKGIEAAGWSDGMSHTRPENMPKQVQSNIWDVVAHGGHKRAHTQANLNWQ HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEE AVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSQKIHSFMAGNLPANAEQWTDIEALPFE EEECCCEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHCCCCEECCCC ADDMLKKDEAGKIISGPLKASIRFAGIQGQLWSETVRSDDVAEYMMFPRLMMLAERAWHK HHHHHHHCCCCCEEECCCEEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC PEWEVPYQYQGAVYNQQSGYFTKEMRQAQAKDWHRVANTLGAKELLKLDKAGIAYRVPTP CCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCEEEECCCC GAVINDGKLFANVIFPGLSIEYRDAKGQWQAYSDGVTVTAPVEVRVIAADGKRKGRILVV CCEEECCCEEEEEECCCCEEEEECCCCCCEEECCCEEEEECEEEEEEEECCCCCCEEEEE N C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7574618 [H]