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The map label for this gene is rimM

Identifier: 167623032

GI number: 167623032

Start: 1336767

End: 1337297

Strand: Direct

Name: rimM

Synonym: Shal_1098

Alternate gene names: 167623032

Gene position: 1336767-1337297 (Clockwise)

Preceding gene: 167623031

Following gene: 167623033

Centisome position: 25.57

GC content: 44.82

Gene sequence:

>531_bases
ATGAGTAGTAAACAAGAACCCGTCATCCTTGGGAAATTAGGTTCCAGTTTTGGCATTAAAGGTTGGTTGAAGATCACTAC
CTATACCGACTCTGTTGAAGGTATCTTTGACTATTCTCCTTGGCTTATTAAAGAACAAGGTGAATGGCGCGAGGTTAAAG
TCGCCCAGTGGCGTTTTCAGGGTAAAGCAGTCGTTGCTTGTCTTGAAGGCGTAACAACACGGGATGAGGCTCAAGCGCTT
ACTAATTGTGAGATTGCTGTGCCTGCTGAGCAGATGCAAGACTTACCAGAAGATGAATTCTACTGGCGAGATCTTATCGG
ATGCGAAGTGATTAACACCAAAGGCTACAACATGGGTACGGTGCAAGAGATCGTGGAAACAGGATCGAATGACGTACTTC
TAGTTAAAGCTAACGCGAAAGATGGCTTTGGCAAAGCGGAACGTATGATTCCCTTTGTTACTGACCAGTTCATCCAAAAG
GTGGACTTGGCAGCAAAACAGATTTTAGTGGATTGGGATCCGGACTTCTAA

Upstream 100 bases:

>100_bases
AGCATTGGGTTGCTAACGGTGCTGCTACTACTGATCGTGTAGCAAAATTGATCAAAGACGCTCGTAAAGCAGCAGCTTAA
TAGCGTTAGGGTATAGATTG

Downstream 100 bases:

>100_bases
GTCGAGGTACAACATATGTGGTTAGGGGTAGTAACCCTGTTTCCAGAGATGTTTCGTGCCGTAACAGACTTTGGTGTAAC
GGGTCGTGCAGTTAGCAAAG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSSKQEPVILGKLGSSFGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQGKAVVACLEGVTTRDEAQAL
TNCEIAVPAEQMQDLPEDEFYWRDLIGCEVINTKGYNMGTVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQK
VDLAAKQILVDWDPDF

Sequences:

>Translated_176_residues
MSSKQEPVILGKLGSSFGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQGKAVVACLEGVTTRDEAQAL
TNCEIAVPAEQMQDLPEDEFYWRDLIGCEVINTKGYNMGTVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQK
VDLAAKQILVDWDPDF
>Mature_175_residues
SSKQEPVILGKLGSSFGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQGKAVVACLEGVTTRDEAQALT
NCEIAVPAEQMQDLPEDEFYWRDLIGCEVINTKGYNMGTVQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQKV
DLAAKQILVDWDPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=171, Percent_Identity=49.7076023391813, Blast_Score=203, Evalue=7e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SHEHH (B0TJ76)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001673326.1
- ProteinModelPortal:   B0TJ76
- SMR:   B0TJ76
- GeneID:   5905178
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_1098
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- BioCyc:   SHAL458817:SHAL_1098-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19817; Mature: 19686

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKQEPVILGKLGSSFGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQ
CCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCEEECCCCEEEECCCCCCEEEEEEEEEC
GKAVVACLEGVTTRDEAQALTNCEIAVPAEQMQDLPEDEFYWRDLIGCEVINTKGYNMGT
CCEEEEEHHCCCCCHHHHHHHCCEEEECHHHHHCCCCCHHHHHHHCCEEEECCCCCCCHH
VQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQKVDLAAKQILVDWDPDF
HHHHHHCCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHEEEEECCCCC
>Mature Secondary Structure 
SSKQEPVILGKLGSSFGIKGWLKITTYTDSVEGIFDYSPWLIKEQGEWREVKVAQWRFQ
CCCCCCEEEEECCCCCCCCEEEEEEEECCCCCEEECCCCEEEECCCCCCEEEEEEEEEC
GKAVVACLEGVTTRDEAQALTNCEIAVPAEQMQDLPEDEFYWRDLIGCEVINTKGYNMGT
CCEEEEEHHCCCCCHHHHHHHCCEEEECHHHHHCCCCCHHHHHHHCCEEEECCCCCCCHH
VQEIVETGSNDVLLVKANAKDGFGKAERMIPFVTDQFIQKVDLAAKQILVDWDPDF
HHHHHHCCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA