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The map label for this gene is betI [H]

Identifier: 167622993

GI number: 167622993

Start: 1292924

End: 1293529

Strand: Reverse

Name: betI [H]

Synonym: Shal_1059

Alternate gene names: 167622993

Gene position: 1293529-1292924 (Counterclockwise)

Preceding gene: 167622994

Following gene: 167622992

Centisome position: 24.75

GC content: 48.18

Gene sequence:

>606_bases
ATGCCGCGCCCGCCAATGAAAACCGTTCGACAACAACAGCTCATCGACGCCACTCTTGTCTCTGTTGAGCGTCACGGCTT
ACACAACACCACCATCAATACCATTAGCGGTTTAGCAGGCTTGTCTTCTGGATTAATTAGTCATTACTTCGGTGGTAAGC
AAGAGCTCATTGAAGCCACGCAAAAGTACCTGCTAGAGCAACTAAAACAAGCACTGTTGAGCCGCACGACAGACAGAGCA
CTGTTACCGATCGAGCGACTGCATGCCATTGTGGAAGCTAACTTTACCGAGCTACAACGCTCAAGGTCCGCCACTAAGAC
TTGGTTAAGCTTTTGGTCACAAGCCATGCATGAGCAAGGCCTTGCCAGACTACAACACATCAATAGCCAACGTTTATATA
GCAACCTCCTGTTCTCTTTCAAAAAACTTCTTCCTAAGGCCCAAGCCGTTACCGCAGCCAAACAAACCGCAGCGATGATC
GATGGTTTTTGGCTACGAAGTGCATTAAGCCCAACGCCAGAGAATGAGTTCCAACAGGCCCAAATTCTATCTAAAGCCTT
TATCGAGGCAGTGATCATGCAGTACGGAGAAAACCGATGTCACTAG

Upstream 100 bases:

>100_bases
GTTATTAATTGAACGTTCAATCAACAATTAAAAATACAAAACAGACACAAAAGCAGACGAAAAATAACAATAAGAATTAA
ACACAGGAATTTGCTCTTTT

Downstream 100 bases:

>100_bases
TCGTTTACCCCAATTATATCCACGGCAAAGCACTCAACAATTCCACTGGCGAAACCTTCGAGGTCATCAATCCAGCCAAT
GGAGAGGTGAGCTATTTAGT

Product: transcriptional regulator BetI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MPRPPMKTVRQQQLIDATLVSVERHGLHNTTINTISGLAGLSSGLISHYFGGKQELIEATQKYLLEQLKQALLSRTTDRA
LLPIERLHAIVEANFTELQRSRSATKTWLSFWSQAMHEQGLARLQHINSQRLYSNLLFSFKKLLPKAQAVTAAKQTAAMI
DGFWLRSALSPTPENEFQQAQILSKAFIEAVIMQYGENRCH

Sequences:

>Translated_201_residues
MPRPPMKTVRQQQLIDATLVSVERHGLHNTTINTISGLAGLSSGLISHYFGGKQELIEATQKYLLEQLKQALLSRTTDRA
LLPIERLHAIVEANFTELQRSRSATKTWLSFWSQAMHEQGLARLQHINSQRLYSNLLFSFKKLLPKAQAVTAAKQTAAMI
DGFWLRSALSPTPENEFQQAQILSKAFIEAVIMQYGENRCH
>Mature_200_residues
PRPPMKTVRQQQLIDATLVSVERHGLHNTTINTISGLAGLSSGLISHYFGGKQELIEATQKYLLEQLKQALLSRTTDRAL
LPIERLHAIVEANFTELQRSRSATKTWLSFWSQAMHEQGLARLQHINSQRLYSNLLFSFKKLLPKAQAVTAAKQTAAMID
GFWLRSALSPTPENEFQQAQILSKAFIEAVIMQYGENRCH

Specific function: Repressor involved in choline regulation of the bet genes [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786505, Length=192, Percent_Identity=45.3125, Blast_Score=159, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR017757
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22714; Mature: 22582

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPPMKTVRQQQLIDATLVSVERHGLHNTTINTISGLAGLSSGLISHYFGGKQELIEAT
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QKYLLEQLKQALLSRTTDRALLPIERLHAIVEANFTELQRSRSATKTWLSFWSQAMHEQG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARLQHINSQRLYSNLLFSFKKLLPKAQAVTAAKQTAAMIDGFWLRSALSPTPENEFQQA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
QILSKAFIEAVIMQYGENRCH
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PRPPMKTVRQQQLIDATLVSVERHGLHNTTINTISGLAGLSSGLISHYFGGKQELIEAT
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QKYLLEQLKQALLSRTTDRALLPIERLHAIVEANFTELQRSRSATKTWLSFWSQAMHEQG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARLQHINSQRLYSNLLFSFKKLLPKAQAVTAAKQTAAMIDGFWLRSALSPTPENEFQQA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
QILSKAFIEAVIMQYGENRCH
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA