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The map label for this gene is ypdF [C]

Identifier: 167622913

GI number: 167622913

Start: 1197894

End: 1199111

Strand: Direct

Name: ypdF [C]

Synonym: Shal_0974

Alternate gene names: 167622913

Gene position: 1197894-1199111 (Clockwise)

Preceding gene: 167622909

Following gene: 167622915

Centisome position: 22.92

GC content: 47.87

Gene sequence:

>1218_bases
ATGACCTTAGGTGTTGGCGGTTCTACCGCAGAGCAGGAATTAGCAAAACTAACCGATATGACTCAAGGCGTAGAGCCTAT
CAGTCGTGAAGAGTATCAAGCTCGAATCGCTAAGGCGCAAGGCATCATGAGTGAGCAGGGGATTGCTGCTATTTACCTTA
ACGCCGGCACTAACCTTTACTACTACACCGGTACTCGTTGGTATGCCAGCGAGCGTATGGTTGGCGCAATTCTTCCTGCT
AATGGCGATGTTGAATATATCGCGCCTGCGTTCGAAGTTGATACCTTAAACGGCTATATGGTTATCGAAGGTAAGGTCAA
TACTTGGCAAGAAGATGAAAGCCCTTTTGCATTGTTTGGCGCAGTGCTGGCTAATATGGGGATTGCCTCTGGTGATATCG
GTATCGATGAGTCTGCCGCTTTCTTTATTTTCGATGGCGTTCGCCAAGCGCATCCTCAATATAACTATATAAATGCTAAA
CCCGTCACCGCCGGTTGTCGCATGATTAAGTCGGCTGTTGAACTGAGCCTGCTACAGCGTGCTAAAGATATGACTCTTGA
GGTGCATAAAGCCGTAGCGCGCATCTTGCATGAAGGCATTACCACCAGCGAAGTGGAAGCCTTTATCAACGCGGCTCACA
TTAAAGTGGGTATTCCAGCAGGTTCATACTTCTGTATCGTACTCTTTGGTGAAGACAGTGCTTATCCACATGGGGTTAAA
TCACCCAAAGCGTTAGAGCTTAATGATACCGTATTAATCGATACCGGCTGTCAGTTATATGGCTATAACTCAGATATCAC
CCGTACTTATGTATATGGTGAGCCTAGCCCACGCCAACGTGAGTTGTGGCAGTTTGAGCAAGACGCACAAATCGCTGGAT
TTGAAGCGGCGCAAATTGGCGCAACCTGTGCCAGTGTTGATCGCGCTGCCCGTGATGTACTCGAAGCGGCAGGTTTTGGC
CCAGGTTATGATGTACCAGGTCTACCACATAGAACTGGTCACGGTGTTGGTCTAGATATCCATGAATGGCCATACTTAGT
GCTAAACGATCATACTCCCCTTGAGGCGGGTATGTGTTTCAGTAATGAACCTATGTTGTGTGTACCGGGCGAGTTCGGTG
TACGTCATGAAGACCACTTCTACATGACTGAGCAAGGACCAGTTTGGTTCACTAAGCCTGCGCACTCAATTGACGATCCG
TTTGGATATGAAGCGTAA

Upstream 100 bases:

>100_bases
GGGCTGATAAGTGTGCCGTTGTGATTGAGTCAAACCATAGAGCCTTGTTTAAGGTTTTATTGTATTTAAGTATAAATAAT
TAAATGTAAAGGGTAAGCAT

Downstream 100 bases:

>100_bases
TAATTGTTATATCTCGTCATAAGCAATGAGACATCTATTTTTGTGTAGAAAGGGCTATGTGTATAGGGTTAGTTTGGTGT
ACGTAATGAAGATCATTTCT

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTLGVGGSTAEQELAKLTDMTQGVEPISREEYQARIAKAQGIMSEQGIAAIYLNAGTNLYYYTGTRWYASERMVGAILPA
NGDVEYIAPAFEVDTLNGYMVIEGKVNTWQEDESPFALFGAVLANMGIASGDIGIDESAAFFIFDGVRQAHPQYNYINAK
PVTAGCRMIKSAVELSLLQRAKDMTLEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVK
SPKALELNDTVLIDTGCQLYGYNSDITRTYVYGEPSPRQRELWQFEQDAQIAGFEAAQIGATCASVDRAARDVLEAAGFG
PGYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCFSNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDP
FGYEA

Sequences:

>Translated_405_residues
MTLGVGGSTAEQELAKLTDMTQGVEPISREEYQARIAKAQGIMSEQGIAAIYLNAGTNLYYYTGTRWYASERMVGAILPA
NGDVEYIAPAFEVDTLNGYMVIEGKVNTWQEDESPFALFGAVLANMGIASGDIGIDESAAFFIFDGVRQAHPQYNYINAK
PVTAGCRMIKSAVELSLLQRAKDMTLEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVK
SPKALELNDTVLIDTGCQLYGYNSDITRTYVYGEPSPRQRELWQFEQDAQIAGFEAAQIGATCASVDRAARDVLEAAGFG
PGYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCFSNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDP
FGYEA
>Mature_404_residues
TLGVGGSTAEQELAKLTDMTQGVEPISREEYQARIAKAQGIMSEQGIAAIYLNAGTNLYYYTGTRWYASERMVGAILPAN
GDVEYIAPAFEVDTLNGYMVIEGKVNTWQEDESPFALFGAVLANMGIASGDIGIDESAAFFIFDGVRQAHPQYNYINAKP
VTAGCRMIKSAVELSLLQRAKDMTLEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVKS
PKALELNDTVLIDTGCQLYGYNSDITRTYVYGEPSPRQRELWQFEQDAQIAGFEAAQIGATCASVDRAARDVLEAAGFGP
GYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCFSNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDPF
GYEA

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=263, Percent_Identity=32.6996197718631, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1789275, Length=253, Percent_Identity=27.6679841897233, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19920384, Length=288, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI21357079, Length=202, Percent_Identity=29.2079207920792, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 44243; Mature: 44112

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS00491 PROLINE_PEPTIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGVGGSTAEQELAKLTDMTQGVEPISREEYQARIAKAQGIMSEQGIAAIYLNAGTNLY
CEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEE
YYTGTRWYASERMVGAILPANGDVEYIAPAFEVDTLNGYMVIEGKVNTWQEDESPFALFG
EECCCEEEECCCEEEEEECCCCCEEEEECEEEEECCCCEEEEECCCCCCCCCCCCHHHHH
AVLANMGIASGDIGIDESAAFFIFDGVRQAHPQYNYINAKPVTAGCRMIKSAVELSLLQR
HHHHHCCCCCCCCCCCCCCEEEEEECHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHH
AKDMTLEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
SPKALELNDTVLIDTGCQLYGYNSDITRTYVYGEPSPRQRELWQFEQDAQIAGFEAAQIG
CCCEEECCCEEEEECCCEEEECCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHC
ATCASVDRAARDVLEAAGFGPGYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCF
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCCEE
SNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDPFGYEA
CCCCCEEECCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TLGVGGSTAEQELAKLTDMTQGVEPISREEYQARIAKAQGIMSEQGIAAIYLNAGTNLY
EECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEE
YYTGTRWYASERMVGAILPANGDVEYIAPAFEVDTLNGYMVIEGKVNTWQEDESPFALFG
EECCCEEEECCCEEEEEECCCCCEEEEECEEEEECCCCEEEEECCCCCCCCCCCCHHHHH
AVLANMGIASGDIGIDESAAFFIFDGVRQAHPQYNYINAKPVTAGCRMIKSAVELSLLQR
HHHHHCCCCCCCCCCCCCCEEEEEECHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHH
AKDMTLEVHKAVARILHEGITTSEVEAFINAAHIKVGIPAGSYFCIVLFGEDSAYPHGVK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
SPKALELNDTVLIDTGCQLYGYNSDITRTYVYGEPSPRQRELWQFEQDAQIAGFEAAQIG
CCCEEECCCEEEEECCCEEEECCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHC
ATCASVDRAARDVLEAAGFGPGYDVPGLPHRTGHGVGLDIHEWPYLVLNDHTPLEAGMCF
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCCEE
SNEPMLCVPGEFGVRHEDHFYMTEQGPVWFTKPAHSIDDPFGYEA
CCCCCEEECCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA