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The map label for this gene is lptF [H]

Identifier: 167622903

GI number: 167622903

Start: 1185563

End: 1186678

Strand: Direct

Name: lptF [H]

Synonym: Shal_0963

Alternate gene names: 167622903

Gene position: 1185563-1186678 (Clockwise)

Preceding gene: 167622901

Following gene: 167622904

Centisome position: 22.68

GC content: 47.85

Gene sequence:

>1116_bases
GTGATTGTATTTAGATATCTGATTCGAGAAGTTTTTAAAGCGCAAATTGCGGTACTTTTGGTGTTGTTAGCTATTTTTAT
TAGCCAACATTTTGTACGCGTGCTTGCTGATGCCTCTGACGGCGAATTTCCTGCCTCGCTAGTTATGACCCTGCTGGGTC
TTAACATGCCGTTTCTTACTGTTTTAGTTTTACCGCTGAGTCTATTTTTGGGCATTTTATTAGCCCATGGACGTATGTAT
GCCGAAAATGAGATGGTTATTTTTCATGGCGTAGGGATCAGCGAGTGGTATATCACCCGAGTCACACTCTTGCTTGCTGT
GATGAATATGGTGTTTACCGCGTTCCTATCTATTTATGTCGCCCCTTGGGCAGAGGAACGACAAAACCAAGTGCTTGAAC
ATGCACAGTCTGAAGCTGGCTTGGCGGCATTGACTCAAGGTCGCTTCCAGACCAGCCCTAACGGCAGAGCAGTGCTGTTT
GTTGAGCGCATTGGTCGTGATAATCAGTTAGATAAAGTCTTTGTTGCCCAGTTACCTGAGCCCGATGATGAAACGGGCGT
CGCCAACGTGGTAGTGGCACGCACAGGCAAAGTGCTCGAAGATGAGACTGGCGGTCAACGTTTGCAGCTAGAAGATGGGG
TGCAATATCAGGGCAGTCCTAAGCGTGTTGACTATCAGGTTGTTGAGTTTGGCGGCTACCAGATGCAGATTAAAGAGCAA
GAGGTTGGCGAGCGTCGGCGTAAATTATCAGCCATGCCAATTGGTGAGCTGATGGATATTGATACGCCTGAGGCTTCGGC
TGAGTTCCACTGGCGTTTAGCGATACCACTGGCTATTCCATTGATGACCTTAATTGCGGTGCCAATGGCGCGAGTGAATA
ACCGTCAGGGTAAGTTTGCCAAGATGTTCCCGGCTATTTTGTTATATCTCGGTTATTTTGGTTTGATGGTTGCTGGTCGT
AAGTCGTTAGAAGATGGCGTGATCCCTCAATATCTAGGGATGTGGTGGATCCATGCTTCCGCCCTCGCGATTGGTATATT
GCTGCTTGGGAAAGAGCGACCGTTAGGGGCTAAAGTCTCTGGTTTGTTTAAGCGTAAGAAGGCGGCCAGAGCATGA

Upstream 100 bases:

>100_bases
TTATGTAATTGTTGGTCACAAAACTACTAAAAGTAGACAGTCTACATGAAAGTTGTATTGATACCAGCATAAATGAAAGT
TTGGAGACCGGATCCTCACT

Downstream 100 bases:

>100_bases
GAATATTAGACTTCTATATTGCCAGAACGCTGATTAGCACTTCATCATTAGCATTATTGGTATTAACTGGGCTATCAGGA
ATTATCAAGTGGGTTGACCA

Product: permease YjgP/YjgQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MIVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLTVLVLPLSLFLGILLAHGRMY
AENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYVAPWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLF
VERIGRDNQLDKVFVAQLPEPDDETGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQIKEQ
EVGERRRKLSAMPIGELMDIDTPEASAEFHWRLAIPLAIPLMTLIAVPMARVNNRQGKFAKMFPAILLYLGYFGLMVAGR
KSLEDGVIPQYLGMWWIHASALAIGILLLGKERPLGAKVSGLFKRKKAARA

Sequences:

>Translated_371_residues
MIVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLTVLVLPLSLFLGILLAHGRMY
AENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYVAPWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLF
VERIGRDNQLDKVFVAQLPEPDDETGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQIKEQ
EVGERRRKLSAMPIGELMDIDTPEASAEFHWRLAIPLAIPLMTLIAVPMARVNNRQGKFAKMFPAILLYLGYFGLMVAGR
KSLEDGVIPQYLGMWWIHASALAIGILLLGKERPLGAKVSGLFKRKKAARA
>Mature_371_residues
MIVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLTVLVLPLSLFLGILLAHGRMY
AENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYVAPWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLF
VERIGRDNQLDKVFVAQLPEPDDETGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQIKEQ
EVGERRRKLSAMPIGELMDIDTPEASAEFHWRLAIPLAIPLMTLIAVPMARVNNRQGKFAKMFPAILLYLGYFGLMVAGR
KSLEDGVIPQYLGMWWIHASALAIGILLLGKERPLGAKVSGLFKRKKAARA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=370, Percent_Identity=36.4864864864865, Blast_Score=197, Evalue=9e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 41328; Mature: 41328

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHH
VLVLPLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYV
HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
APWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPE
CCCHHHHHHHHHHHHHHCCCHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHCCCC
PDDETGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQIKEQ
CCCCCCHHEEEEECCCCHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCEEEEECHH
EVGERRRKLSAMPIGELMDIDTPEASAEFHWRLAIPLAIPLMTLIAVPMARVNNRQGKFA
HHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHH
KMFPAILLYLGYFGLMVAGRKSLEDGVIPQYLGMWWIHASALAIGILLLGKERPLGAKVS
HHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
GLFKRKKAARA
HHHHHHHHCCC
>Mature Secondary Structure
MIVFRYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHH
VLVLPLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYV
HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
APWAEERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPE
CCCHHHHHHHHHHHHHHCCCHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHCCCC
PDDETGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQIKEQ
CCCCCCHHEEEEECCCCHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCEEEEECHH
EVGERRRKLSAMPIGELMDIDTPEASAEFHWRLAIPLAIPLMTLIAVPMARVNNRQGKFA
HHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHH
KMFPAILLYLGYFGLMVAGRKSLEDGVIPQYLGMWWIHASALAIGILLLGKERPLGAKVS
HHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
GLFKRKKAARA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]