| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167622815
Identifier: 167622815
GI number: 167622815
Start: 1092602
End: 1093162
Strand: Direct
Name: 167622815
Synonym: Shal_0875
Alternate gene names: NA
Gene position: 1092602-1093162 (Clockwise)
Preceding gene: 167622814
Following gene: 167622821
Centisome position: 20.9
GC content: 44.21
Gene sequence:
>561_bases ATGTCAGAGAAATGCTTTATTACCGCACAAGAGTTGCTAGAAGATTCTTTTCGATTAGCGGCGCAAGTTTATGAGAGTGG CTTCCGTCCACAGTTCATCGTGGGTATTTGGCGTGGTGGTGCTCCAATTGGTATCGCGGTGCAAGAGTTTTTCGATTTCA AGAAGGTTGAAACTGACCATATTGCGGTACGTACTTCGTCTTACTATGGCATTAACAAGCAAAGCAAGCAGATCAAGGTA CACGGCCTACATTACATTGTAGAAAACGCCAATGCCGATGATGGCCTATTGATTGTTGATGACGTGTTTGACTCGGGTCG CAGTATCCATGCATTGATGGAAAACTTAAGCGATTTGATGCGCTTGAATATGCCAAAAGATGTGCGTATTGCTTGCCCAT ACTACAAGCCACAAAATACAGCGGTGCCATTAAAGCCTGACTATTTTATCCATGAATCGGATGAGTGGTTAGTGTTCCCG CACGAAGTTTCAGGTCTGTCGCCTGAAGAGCTTGCCGAAGGCAAGGGTGACCTGAAAAACATTAAACACCTATTTGTTTA A
Upstream 100 bases:
>100_bases TTAATGCTCCTCGTCAGAGTGTTGCTACAAGTAGAGCAATTGATGTTGTGATAGGTATAAGACCTAATTTAGATATTAAT AACAAGATGGGGACGGTCAG
Downstream 100 bases:
>100_bases GCTTGTTACAGTGTAAGTTCACTGGAGCTTGAGCAAGCATTAAAAAGCCACCGACAGGTGGCTTTTGTGTTTAGAGCCTA GAACCGGATTTAACCCTGTT
Product: phosphoribosyltransferase
Products: NA
Alternate protein names: Hypoxanthine-Guanine Phosphoribosyltransferase; Hypoxanthine Phosphoribosyltransferase; Phosphoribosyl Transferase Domain Protein
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MSEKCFITAQELLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEFFDFKKVETDHIAVRTSSYYGINKQSKQIKV HGLHYIVENANADDGLLIVDDVFDSGRSIHALMENLSDLMRLNMPKDVRIACPYYKPQNTAVPLKPDYFIHESDEWLVFP HEVSGLSPEELAEGKGDLKNIKHLFV
Sequences:
>Translated_186_residues MSEKCFITAQELLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEFFDFKKVETDHIAVRTSSYYGINKQSKQIKV HGLHYIVENANADDGLLIVDDVFDSGRSIHALMENLSDLMRLNMPKDVRIACPYYKPQNTAVPLKPDYFIHESDEWLVFP HEVSGLSPEELAEGKGDLKNIKHLFV >Mature_185_residues SEKCFITAQELLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEFFDFKKVETDHIAVRTSSYYGINKQSKQIKVH GLHYIVENANADDGLLIVDDVFDSGRSIHALMENLSDLMRLNMPKDVRIACPYYKPQNTAVPLKPDYFIHESDEWLVFPH EVSGLSPEELAEGKGDLKNIKHLFV
Specific function: Unknown
COG id: COG2236
COG function: function code R; Predicted phosphoribosyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21117; Mature: 20986
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKCFITAQELLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEFFDFKKVETDH CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEHHHHHHHHHHHCCCCE IAVRTSSYYGINKQSKQIKVHGLHYIVENANADDGLLIVDDVFDSGRSIHALMENLSDLM EEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH RLNMPKDVRIACPYYKPQNTAVPLKPDYFIHESDEWLVFPHEVSGLSPEELAEGKGDLKN HCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEECHHCCCCCHHHHHCCCCCHHH IKHLFV HHHHCC >Mature Secondary Structure SEKCFITAQELLEDSFRLAAQVYESGFRPQFIVGIWRGGAPIGIAVQEFFDFKKVETDH CCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEHHHHHHHHHHHCCCCE IAVRTSSYYGINKQSKQIKVHGLHYIVENANADDGLLIVDDVFDSGRSIHALMENLSDLM EEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH RLNMPKDVRIACPYYKPQNTAVPLKPDYFIHESDEWLVFPHEVSGLSPEELAEGKGDLKN HCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCEEEECHHCCCCCHHHHHCCCCCHHH IKHLFV HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA