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The map label for this gene is xerD [H]

Identifier: 167622800

GI number: 167622800

Start: 1072501

End: 1073403

Strand: Direct

Name: xerD [H]

Synonym: Shal_0860

Alternate gene names: 167622800

Gene position: 1072501-1073403 (Clockwise)

Preceding gene: 167622799

Following gene: 167622801

Centisome position: 20.52

GC content: 52.49

Gene sequence:

>903_bases
GTGACCGATAAGTACACGCCCGATAGCTTAATTGATCTGTTCTTAGACGATCTTTGGTCAACCAAGGGGCTTAGCGATAA
CACCTTAAGTGCCTATCGCACCGACCTGCGTCACCTCGACCGTTACCTGCAAAAGTTGGGGGGGGAGCTAGTCACTTGCT
CTCAGCTTGAAGTGCGAGACTATCTTGCTGAACGCTTCGATAAGGGCAGCGCTAAGACCAGTAGTGCGCGCATGATGAGC
AGCCTTAGACGCTTCTATGGTTATCTTATCGTCAAAAAGCAGATCGATACCGATCCCATGGCATTGATCGAGTCACCTAA
ACTTTCCCGTAAACTCCCGGACTCATTGAGTGAAGAGGATATCGACCGTTTGTTGGCGGAGCCTATTGAAGACGATCCTA
TCGAGTGCCGTGATAAAGCCATGCTAGAGCTGTTATACGCCACAGGGCTTCGTGTCTCTGAGCTGGTGGGCTTGACCATG
GAGCAACTAAGCTTGCGCCAAGGGCTGGTGCGCATTACGGGTAAAGGCGGTAAGGAGCGTTTAGTGCCGCTTGGCGAGCT
GGCCATCACCGAGATAGAGTCCTACCTTAAGTTTGCCAGAACCGAGCTGCTTAAGGGCAAGCAGAGTGATGTATTGTTCC
CCTCAAAGCGGGGGCAGCAGATGACGCGACAAACCTTTTGGCATCGTATTAAGCTTTATGCCTTAAGGGCTGGCATTAGC
ACCGAACTGTCACCGCACACCCTAAGGCACGCATTTGCTACTCATCTGCTTAACCATGGAGCGGATCTGCGCGTGGTGCA
GCTGTTGCTCGGCCATAGCGACCTGTCGACGACGCAAATCTATACCCATGTTGCGACTGCAAGGCTGGCAACACTGCACA
GTGAACATCATCCCCGAGGCTGA

Upstream 100 bases:

>100_bases
GCCGTCCTAGAAGTGAGCTTGCGAACGTCCTAAAACCTAGGATCTTCTTCTAAAGTAGGTCGGCATTTATGCCGAGTCAG
ATTTTATATAGGAATGAGAA

Downstream 100 bases:

>100_bases
TTTTTAAGCAGGGTTCAATTGCGTTTAAGTTGGAAGGAAAAAGTGTTGATTAGAAGAGATAGGCTTTCACGCTAGCATTT
GAAGTGCTTTTGGGCTTATT

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTDKYTPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRDYLAERFDKGSAKTSSARMMS
SLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDIDRLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTM
EQLSLRQGLVRITGKGGKERLVPLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGIS
TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHPRG

Sequences:

>Translated_300_residues
MTDKYTPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRDYLAERFDKGSAKTSSARMMS
SLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDIDRLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTM
EQLSLRQGLVRITGKGGKERLVPLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGIS
TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHPRG
>Mature_299_residues
TDKYTPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRDYLAERFDKGSAKTSSARMMSS
LRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDIDRLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTME
QLSLRQGLVRITGKGGKERLVPLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGIST
ELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=62.1993127147766, Blast_Score=357, Evalue=1e-100,
Organism=Escherichia coli, GI1790244, Length=301, Percent_Identity=37.5415282392027, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1790768, Length=157, Percent_Identity=33.7579617834395, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790767, Length=184, Percent_Identity=29.3478260869565, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34034; Mature: 33902

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKYTPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRD
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
YLAERFDKGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEED
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCCCHHHHCCCCCCHHH
IDRLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKER
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCC
LVPLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGIS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHPRG
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDKYTPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRD
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
YLAERFDKGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEED
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCCCHHHHCCCCCCHHH
IDRLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKER
HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCC
LVPLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGIS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHPRG
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]