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The map label for this gene is csgD [C]

Identifier: 167622780

GI number: 167622780

Start: 1042900

End: 1043853

Strand: Reverse

Name: csgD [C]

Synonym: Shal_0840

Alternate gene names: 167622780

Gene position: 1043853-1042900 (Counterclockwise)

Preceding gene: 167622783

Following gene: 167622779

Centisome position: 19.97

GC content: 47.48

Gene sequence:

>954_bases
ATGCAAAGAGTTCCTCCCGACAACTTTATCAGTCGACTCTATCGGGAGTCGCCACGAGTATCGCTCGAGGAATTCCCCGT
GTGGACATTAAACTTTCTGCGGCAGGTACTCCATTTTGATGGCGCTATCTGGGGAACGGGACATATCTCTACCAAAGCAT
TCCACACTCAGACTGCCATCAATATCTCAACTGATATTTTTGACCAGTTGCAAGCGAACCTAGCCATCAACCCCATCTTT
GAAACGCTCTTTTCAACGCAAGGAGGCGCCGTAGACATGCGAGATGTATTCCCGGATGAGCAGTTCTATGACTCCACCCT
TTATCACAACTGTTTTAAGCCATTTGGAATTGAGCGAATATTAAGTTCTCTGCATATTGATGAGCGAAGTGGCATTTTTA
CCCTGCTCACTCTGTATCGTTACAACCGAGAAGAGGGCTTCAGCGCAGAGGAAAAAAGTATTCAGAATCGATTACTCTAT
CACCTGCTCAGCGCAGCTTCTCATCGACAACTGCTAGCCCTTTGTGAGCAGGATGAAAACCCAAGTGTTCACTGCAGCGC
CATCTGCGATTGTGAAGGTATCTACCATTGTGTCGACTCGAGTTTTCTGGACACCTTAGAGGCTCATCTGCAAACACCGG
CAGTTCAGAAATTTCCATTTCCCATCGCGGCGCAAGCTCATCAATTTACCGAAGGTGAGCTTCAGTTTGACCAGACTCGA
ATGGGCGATCTCTATCGGATCTCCCTACGAGTAAAGAATCAGCTCGACGAGCTCACGGCAAGAGAGAGGCAGATCGTTGC
AGAGATTTGCAAAGGGGGAACCTTCAAACAGATAGCCCGTAAGTTAGCGCTATCCCCATCGACGGTATCAAACCACCTCT
ATCGCATCTACGCAAAGCTTGGGATCAATACCCGCAGTGAGTTAGTCAGCATTGCTAATAATTGCAAATACTAA

Upstream 100 bases:

>100_bases
CTTGTCTCATTCCATTACCAGCTGTTAGCATATGAATGATATTTATACTGTTATGAATAACACCTTCTGGCCATAGTAAA
AATTACCTAATGGGTTAAAT

Downstream 100 bases:

>100_bases
GTTAAACGATACACTGCCAGCTTTCCCATCATCTCTGCACTGCTAGAATGTAAAACAGATATTCAGTGCTATGACTCAAG
ACAGGACAAAACAGTGCAAT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: GerE Family Transcriptional Regulator; Transcriptional Regulator LuxR Family; Transcriptional Regulator; Response Regulator; LuxR Superfamily Regulatory Protein; Regulatory Protein LuxR

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MQRVPPDNFISRLYRESPRVSLEEFPVWTLNFLRQVLHFDGAIWGTGHISTKAFHTQTAINISTDIFDQLQANLAINPIF
ETLFSTQGGAVDMRDVFPDEQFYDSTLYHNCFKPFGIERILSSLHIDERSGIFTLLTLYRYNREEGFSAEEKSIQNRLLY
HLLSAASHRQLLALCEQDENPSVHCSAICDCEGIYHCVDSSFLDTLEAHLQTPAVQKFPFPIAAQAHQFTEGELQFDQTR
MGDLYRISLRVKNQLDELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKLGINTRSELVSIANNCKY

Sequences:

>Translated_317_residues
MQRVPPDNFISRLYRESPRVSLEEFPVWTLNFLRQVLHFDGAIWGTGHISTKAFHTQTAINISTDIFDQLQANLAINPIF
ETLFSTQGGAVDMRDVFPDEQFYDSTLYHNCFKPFGIERILSSLHIDERSGIFTLLTLYRYNREEGFSAEEKSIQNRLLY
HLLSAASHRQLLALCEQDENPSVHCSAICDCEGIYHCVDSSFLDTLEAHLQTPAVQKFPFPIAAQAHQFTEGELQFDQTR
MGDLYRISLRVKNQLDELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKLGINTRSELVSIANNCKY
>Mature_317_residues
MQRVPPDNFISRLYRESPRVSLEEFPVWTLNFLRQVLHFDGAIWGTGHISTKAFHTQTAINISTDIFDQLQANLAINPIF
ETLFSTQGGAVDMRDVFPDEQFYDSTLYHNCFKPFGIERILSSLHIDERSGIFTLLTLYRYNREEGFSAEEKSIQNRLLY
HLLSAASHRQLLALCEQDENPSVHCSAICDCEGIYHCVDSSFLDTLEAHLQTPAVQKFPFPIAAQAHQFTEGELQFDQTR
MGDLYRISLRVKNQLDELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKLGINTRSELVSIANNCKY

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36262; Mature: 36262

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRVPPDNFISRLYRESPRVSLEEFPVWTLNFLRQVLHFDGAIWGTGHISTKAFHTQTAI
CCCCCHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCEEECCCCCCHHEEHHHEE
NISTDIFDQLQANLAINPIFETLFSTQGGAVDMRDVFPDEQFYDSTLYHNCFKPFGIERI
ECHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEHHHCCCCHHHHHHHHHHHHCCCCCHHHH
LSSLHIDERSGIFTLLTLYRYNREEGFSAEEKSIQNRLLYHLLSAASHRQLLALCEQDEN
HHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSVHCSAICDCEGIYHCVDSSFLDTLEAHLQTPAVQKFPFPIAAQAHQFTEGELQFDQTR
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHCCCCCEEECHHC
MGDLYRISLRVKNQLDELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKL
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
GINTRSELVSIANNCKY
CCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MQRVPPDNFISRLYRESPRVSLEEFPVWTLNFLRQVLHFDGAIWGTGHISTKAFHTQTAI
CCCCCHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCEEECCCCCCHHEEHHHEE
NISTDIFDQLQANLAINPIFETLFSTQGGAVDMRDVFPDEQFYDSTLYHNCFKPFGIERI
ECHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEHHHCCCCHHHHHHHHHHHHCCCCCHHHH
LSSLHIDERSGIFTLLTLYRYNREEGFSAEEKSIQNRLLYHLLSAASHRQLLALCEQDEN
HHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSVHCSAICDCEGIYHCVDSSFLDTLEAHLQTPAVQKFPFPIAAQAHQFTEGELQFDQTR
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHCCCCCEEECHHC
MGDLYRISLRVKNQLDELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKL
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
GINTRSELVSIANNCKY
CCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA