| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is gltT [H]
Identifier: 167622767
GI number: 167622767
Start: 1030351
End: 1031649
Strand: Direct
Name: gltT [H]
Synonym: Shal_0827
Alternate gene names: 167622767
Gene position: 1030351-1031649 (Clockwise)
Preceding gene: 167622766
Following gene: 167622769
Centisome position: 19.71
GC content: 45.88
Gene sequence:
>1299_bases ATGTCAATTCAACAACCTTCACTGGTGAAAAAAGTGTGGTCGAGCTGGATGTCTGTGCCCCTATGGCTACAGATAATGAT TGGTATGCTATTAGGTATTTTAACTGGCATAGGCTTAGGTGAGCAGGCGACCTACTTGAAACCAATTGGAACGCTATTTG TTAACACGATCAAGATGTTGATTGTGCCACTCGTGTTCTGTTCTTTAATTGTCGGTGTGACCTCTATGCAAGATACTGCA AAGATGGGCCGCATTGGTTTCAAGTCGTTCGCTTTCTACTTAGGCACAACCTCTATCGCCATTACGCTAGGTTTAGCGGT TGGCCAATTTATGCAGCCTGGTGCTGGTTTAGATATGGTGCCTCATGAAACAGCTGAAGTAATTAAGCAAGCGCCATCTG TGATGCAAACCTTGATTGATATCGTGCCTACTAATCCGATTGCTGCACTTGCTAGTGGTCAGATTTTACAAGTTATTGTA TTTGCGGTAGCCCTAGGTATTGCCTTGGTGTTGATTGGCGAGCATGGCAAACCAGCAATTAAGGTGTTCGAAAGTCTAGC CGAAGCCATGTATAAGCTTACAGACTTAGTGATGAAGCTTGCACCATACGGCGTATTTGGTTTGATGGCTTGGGTTGCGG GCGAATACGGCGTGGATATGTTGATGCCGTTAATCAAGGTGATTGTGGCAGTATATATCGGTTGCTTCTTGCATGTTGTT GGCTTCTACAGTTTTGTTTTAGTGGTGTTTGCTAAGCTTAATCCAATTCAATTTTTCAAAGGTATTAGCAATGCGATTGC TGTCGCTTATACCACCTCTAGTTCTGCAGGCACGCTGCCAGCCAGTATGAAATGTGCCAGCGAATACTTAGGCGTTAACA AGAAGATCTCAAGTTTTGTACTGCCTCTAGGTACCACGATTAACATGGACGGCACCGCGCTTTACCAAGGCGTTACGGCA CTGTTTGTGGCGCAAGCTTTTGGTATCGATCTGACTTGGGTCGATTACATCACTATCATCTTAACTGCAACGTTAGCCTC AATTGGTACCGCTGGTGTGCCAGGAGCGGGCCTTGTAATGCTAACCTTGGTATTGACCACAGTGGGTCTACCGCTTGAAG GTGTTGCCCTGATTGCCGGTATCGACCGTATCTTGGATATGGCGCGCACGGTTGTGAACGTGTCTGGTGACTTAGTCGCG ACCACTGTGATTGCAAAATCTGAAGGCGAAATCGACGTTGAGCATTACAACGCCAATGCCGAAGAAAGTGCAGAGATGGC TGAAAGGTTAAAGTCTTAA
Upstream 100 bases:
>100_bases AGATCATCTCTCGCTTCTAAAGCTTATGCTAAACTGCCGCGTTATTTTTGAGCTAGTCATGCGCTGGTAGTCCCCCCTTC AATTGTTTCAAGGTTTAAAT
Downstream 100 bases:
>100_bases TTGCTTAATTAATTATTCACCATTGTGTTAACGCATAAAAAAACCGCCAAAAGGCGGTTTTTTTATGTCTGGAACATTTA TGACGATTTACCATGGATGG
Product: sodium:dicarboxylate symporter
Products: L-aspartate [Cytoplasm]; Proton [Cytoplasm]; L-glutamate [Cytoplasm] [C]
Alternate protein names: Glutamate-aspartate carrier protein [H]
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MSIQQPSLVKKVWSSWMSVPLWLQIMIGMLLGILTGIGLGEQATYLKPIGTLFVNTIKMLIVPLVFCSLIVGVTSMQDTA KMGRIGFKSFAFYLGTTSIAITLGLAVGQFMQPGAGLDMVPHETAEVIKQAPSVMQTLIDIVPTNPIAALASGQILQVIV FAVALGIALVLIGEHGKPAIKVFESLAEAMYKLTDLVMKLAPYGVFGLMAWVAGEYGVDMLMPLIKVIVAVYIGCFLHVV GFYSFVLVVFAKLNPIQFFKGISNAIAVAYTTSSSAGTLPASMKCASEYLGVNKKISSFVLPLGTTINMDGTALYQGVTA LFVAQAFGIDLTWVDYITIILTATLASIGTAGVPGAGLVMLTLVLTTVGLPLEGVALIAGIDRILDMARTVVNVSGDLVA TTVIAKSEGEIDVEHYNANAEESAEMAERLKS
Sequences:
>Translated_432_residues MSIQQPSLVKKVWSSWMSVPLWLQIMIGMLLGILTGIGLGEQATYLKPIGTLFVNTIKMLIVPLVFCSLIVGVTSMQDTA KMGRIGFKSFAFYLGTTSIAITLGLAVGQFMQPGAGLDMVPHETAEVIKQAPSVMQTLIDIVPTNPIAALASGQILQVIV FAVALGIALVLIGEHGKPAIKVFESLAEAMYKLTDLVMKLAPYGVFGLMAWVAGEYGVDMLMPLIKVIVAVYIGCFLHVV GFYSFVLVVFAKLNPIQFFKGISNAIAVAYTTSSSAGTLPASMKCASEYLGVNKKISSFVLPLGTTINMDGTALYQGVTA LFVAQAFGIDLTWVDYITIILTATLASIGTAGVPGAGLVMLTLVLTTVGLPLEGVALIAGIDRILDMARTVVNVSGDLVA TTVIAKSEGEIDVEHYNANAEESAEMAERLKS >Mature_431_residues SIQQPSLVKKVWSSWMSVPLWLQIMIGMLLGILTGIGLGEQATYLKPIGTLFVNTIKMLIVPLVFCSLIVGVTSMQDTAK MGRIGFKSFAFYLGTTSIAITLGLAVGQFMQPGAGLDMVPHETAEVIKQAPSVMQTLIDIVPTNPIAALASGQILQVIVF AVALGIALVLIGEHGKPAIKVFESLAEAMYKLTDLVMKLAPYGVFGLMAWVAGEYGVDMLMPLIKVIVAVYIGCFLHVVG FYSFVLVVFAKLNPIQFFKGISNAIAVAYTTSSSAGTLPASMKCASEYLGVNKKISSFVLPLGTTINMDGTALYQGVTAL FVAQAFGIDLTWVDYITIILTATLASIGTAGVPGAGLVMLTLVLTTVGLPLEGVALIAGIDRILDMARTVVNVSGDLVAT TVIAKSEGEIDVEHYNANAEESAEMAERLKS
Specific function: This carrier protein is part of the Na(+)-dependent, binding-protein-independent glutamate-aspartate transport system [H]
COG id: COG1301
COG function: function code C; Na+/H+-dicarboxylate symporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]
Homologues:
Organism=Homo sapiens, GI40254478, Length=476, Percent_Identity=32.3529411764706, Blast_Score=201, Evalue=1e-51, Organism=Homo sapiens, GI21314632, Length=436, Percent_Identity=31.8807339449541, Blast_Score=193, Evalue=3e-49, Organism=Homo sapiens, GI169790839, Length=444, Percent_Identity=30.8558558558559, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI66773030, Length=459, Percent_Identity=32.244008714597, Blast_Score=186, Evalue=5e-47, Organism=Homo sapiens, GI5032093, Length=375, Percent_Identity=36.2666666666667, Blast_Score=185, Evalue=7e-47, Organism=Homo sapiens, GI4827012, Length=302, Percent_Identity=36.4238410596026, Blast_Score=180, Evalue=2e-45, Organism=Homo sapiens, GI223468564, Length=250, Percent_Identity=40.4, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI223468566, Length=250, Percent_Identity=40.4, Blast_Score=171, Evalue=2e-42, Organism=Homo sapiens, GI194239697, Length=255, Percent_Identity=39.2156862745098, Blast_Score=169, Evalue=4e-42, Organism=Homo sapiens, GI301601644, Length=197, Percent_Identity=36.0406091370558, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI262359914, Length=378, Percent_Identity=27.5132275132275, Blast_Score=128, Evalue=1e-29, Organism=Escherichia coli, GI1790514, Length=421, Percent_Identity=38.479809976247, Blast_Score=272, Evalue=3e-74, Organism=Escherichia coli, GI1789947, Length=408, Percent_Identity=36.2745098039216, Blast_Score=240, Evalue=1e-64, Organism=Escherichia coli, GI1788024, Length=412, Percent_Identity=28.8834951456311, Blast_Score=142, Evalue=5e-35, Organism=Escherichia coli, GI1789473, Length=376, Percent_Identity=27.1276595744681, Blast_Score=97, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71996953, Length=464, Percent_Identity=35.1293103448276, Blast_Score=229, Evalue=2e-60, Organism=Caenorhabditis elegans, GI71983099, Length=473, Percent_Identity=33.1923890063425, Blast_Score=211, Evalue=6e-55, Organism=Caenorhabditis elegans, GI71983106, Length=468, Percent_Identity=33.3333333333333, Blast_Score=208, Evalue=5e-54, Organism=Caenorhabditis elegans, GI17537407, Length=462, Percent_Identity=31.3852813852814, Blast_Score=198, Evalue=4e-51, Organism=Caenorhabditis elegans, GI193206505, Length=467, Percent_Identity=31.9057815845824, Blast_Score=192, Evalue=4e-49, Organism=Caenorhabditis elegans, GI193206654, Length=431, Percent_Identity=30.1624129930394, Blast_Score=183, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17541374, Length=394, Percent_Identity=29.9492385786802, Blast_Score=158, Evalue=5e-39, Organism=Drosophila melanogaster, GI24583025, Length=441, Percent_Identity=30.8390022675737, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI17137668, Length=441, Percent_Identity=30.8390022675737, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI24583023, Length=441, Percent_Identity=30.8390022675737, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI281360481, Length=461, Percent_Identity=29.2841648590022, Blast_Score=145, Evalue=5e-35, Organism=Drosophila melanogaster, GI281360483, Length=461, Percent_Identity=29.2841648590022, Blast_Score=145, Evalue=7e-35, Organism=Drosophila melanogaster, GI17137666, Length=461, Percent_Identity=29.2841648590022, Blast_Score=145, Evalue=7e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018107 [H]
Pfam domain/function: PF00375 SDF [H]
EC number: NA
Molecular weight: Translated: 45740; Mature: 45609
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS00714 NA_DICARBOXYL_SYMP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIQQPSLVKKVWSSWMSVPLWLQIMIGMLLGILTGIGLGEQATYLKPIGTLFVNTIKML CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH IVPLVFCSLIVGVTSMQDTAKMGRIGFKSFAFYLGTTSIAITLGLAVGQFMQPGAGLDMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PHETAEVIKQAPSVMQTLIDIVPTNPIAALASGQILQVIVFAVALGIALVLIGEHGKPAI CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH KVFESLAEAMYKLTDLVMKLAPYGVFGLMAWVAGEYGVDMLMPLIKVIVAVYIGCFLHVV HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH GFYSFVLVVFAKLNPIQFFKGISNAIAVAYTTSSSAGTLPASMKCASEYLGVNKKISSFV HHHHHHHHHHHHCCHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHH LPLGTTINMDGTALYQGVTALFVAQAFGIDLTWVDYITIILTATLASIGTAGVPGAGLVM HCCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LTLVLTTVGLPLEGVALIAGIDRILDMARTVVNVSGDLVATTVIAKSEGEIDVEHYNANA HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCEEEEECCCCH EESAEMAERLKS HHHHHHHHHHCC >Mature Secondary Structure SIQQPSLVKKVWSSWMSVPLWLQIMIGMLLGILTGIGLGEQATYLKPIGTLFVNTIKML CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH IVPLVFCSLIVGVTSMQDTAKMGRIGFKSFAFYLGTTSIAITLGLAVGQFMQPGAGLDMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PHETAEVIKQAPSVMQTLIDIVPTNPIAALASGQILQVIVFAVALGIALVLIGEHGKPAI CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH KVFESLAEAMYKLTDLVMKLAPYGVFGLMAWVAGEYGVDMLMPLIKVIVAVYIGCFLHVV HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH GFYSFVLVVFAKLNPIQFFKGISNAIAVAYTTSSSAGTLPASMKCASEYLGVNKKISSFV HHHHHHHHHHHHCCHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHH LPLGTTINMDGTALYQGVTALFVAQAFGIDLTWVDYITIILTATLASIGTAGVPGAGLVM HCCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH LTLVLTTVGLPLEGVALIAGIDRILDMARTVVNVSGDLVATTVIAKSEGEIDVEHYNANA HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCEEEEECCCCH EESAEMAERLKS HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-aspartate [Periplasm]; Proton [Periplasm]; L-glutamate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-aspartate [Periplasm] = Proton [Cytoplasm] + L-aspartate [Cytoplasm] Proton [Periplasm] + L-glutamate [Periplasm] = Proton [Cytoplasm] + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]