| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622737
Identifier: 167622737
GI number: 167622737
Start: 992184
End: 992708
Strand: Reverse
Name: 167622737
Synonym: Shal_0797
Alternate gene names: NA
Gene position: 992708-992184 (Counterclockwise)
Preceding gene: 167622742
Following gene: 167622734
Centisome position: 18.99
GC content: 46.86
Gene sequence:
>525_bases ATGAAAAAGACAATCTCTGCAGTCGCGCTAACTGCAATCCTAAGCACTCAACTTACCGGTTGTATGGGCCAAATGGGCCT AAGCGCCATGGTAACTAAGGCTAACCTTAGCGCTGTAGACAACCGTTACGGTCGTGCAGGCCTGTTCATCTTAATGAGCC CAATTTATGGCTTTGCTGCTACTGGCGATCTATTTATTATTAACAGCATCGAATTCTGGACTGGCACCAACCCTGTAACA GGCCGTTCACCTGCGGTTGTCGACATGCCAGTTGAAGCGATTTTCAAGGTTAACCAACACATCGATGGCGACCTAACAAC CGCCCCGCTAAAGAACGTTAAGTTAACTAGCGCTTCAATGGTTGCAACTGACGAAAATACCTTGGCAATGACACTCATTT ATGAAGATGGTAGCCAGCAGGTTATGTCTGGCGTTAAGCAAGATGAGCATGTTGATTTCTATCTAGATAACACATTCATT GCGCGCGTGAGCACTGATGAGCTTGCCGCGTACCAGCAAGGTTAA
Upstream 100 bases:
>100_bases ACAAAACATTTTCCCAACCCAGAGTTGCGAGCCTTGTCACATCTCAATTTTTACCGATACATACAATCAGCGCCATTCTC AATTCAGTAAGATTAAACCA
Downstream 100 bases:
>100_bases TACCAATAGGTATAATGAATAACGCTTACTCCGTGATCTGAAAAGGGCCAGTCATACTGGCCCTTTTTTTATCCGTGTTG ATTCAAAACGATTAACGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MKKTISAVALTAILSTQLTGCMGQMGLSAMVTKANLSAVDNRYGRAGLFILMSPIYGFAATGDLFIINSIEFWTGTNPVT GRSPAVVDMPVEAIFKVNQHIDGDLTTAPLKNVKLTSASMVATDENTLAMTLIYEDGSQQVMSGVKQDEHVDFYLDNTFI ARVSTDELAAYQQG
Sequences:
>Translated_174_residues MKKTISAVALTAILSTQLTGCMGQMGLSAMVTKANLSAVDNRYGRAGLFILMSPIYGFAATGDLFIINSIEFWTGTNPVT GRSPAVVDMPVEAIFKVNQHIDGDLTTAPLKNVKLTSASMVATDENTLAMTLIYEDGSQQVMSGVKQDEHVDFYLDNTFI ARVSTDELAAYQQG >Mature_174_residues MKKTISAVALTAILSTQLTGCMGQMGLSAMVTKANLSAVDNRYGRAGLFILMSPIYGFAATGDLFIINSIEFWTGTNPVT GRSPAVVDMPVEAIFKVNQHIDGDLTTAPLKNVKLTSASMVATDENTLAMTLIYEDGSQQVMSGVKQDEHVDFYLDNTFI ARVSTDELAAYQQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18710; Mature: 18710
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTISAVALTAILSTQLTGCMGQMGLSAMVTKANLSAVDNRYGRAGLFILMSPIYGFAA CCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEHHHHHHHHCCCCCCEEEEEECCHHCEEC TGDLFIINSIEFWTGTNPVTGRSPAVVDMPVEAIFKVNQHIDGDLTTAPLKNVKLTSASM CCCEEEEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCEECCCCCEEECCCEE VATDENTLAMTLIYEDGSQQVMSGVKQDEHVDFYLDNTFIARVSTDELAAYQQG EEECCCEEEEEEEEECCCHHHHHCCCCCCCEEEEECCEEEEEECHHHHHHCCCC >Mature Secondary Structure MKKTISAVALTAILSTQLTGCMGQMGLSAMVTKANLSAVDNRYGRAGLFILMSPIYGFAA CCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEHHHHHHHHCCCCCCEEEEEECCHHCEEC TGDLFIINSIEFWTGTNPVTGRSPAVVDMPVEAIFKVNQHIDGDLTTAPLKNVKLTSASM CCCEEEEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCEECCCCCEEECCCEE VATDENTLAMTLIYEDGSQQVMSGVKQDEHVDFYLDNTFIARVSTDELAAYQQG EEECCCEEEEEEEEECCCHHHHHCCCCCCCEEEEECCEEEEEECHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA