| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622734
Identifier: 167622734
GI number: 167622734
Start: 989257
End: 989667
Strand: Reverse
Name: 167622734
Synonym: Shal_0794
Alternate gene names: NA
Gene position: 989667-989257 (Counterclockwise)
Preceding gene: 167622737
Following gene: 167622733
Centisome position: 18.93
GC content: 48.42
Gene sequence:
>411_bases ATGGCCAGAAAAGAACTCACAGAAAAACAATTTATGGTCCAACGTTTTTCTAAGACAGCCCTACGCGCTTTGCATATCTT GGGGATCACCGGAGCTGGCGGTGGCATTTTACTGCATGTTCCCCAGGAACAATGGCTGCTCTACTGGATCATGGCCATGA GCACAGGCTCTGCCATGATGCTATGGGAAATAGTGCGTGACTGGCGCTGGCTAATTCAGCTAAAGGGTGTGCTGACTCTG GTAAAGCTCGGCTTGCTAGGCTTGTTTATCCCCTTTGCCGCATACAAGCCTGAGTTGCTGATCGCTATCGTGTTATTATC TGTGGTGGTATCTCACGGCCCTGCAGGGCTAAGACATTTTTCAATAGTACATGGACGCAGAATTGGTGGAAGAAAAGAAG TTAAGGGCTAA
Upstream 100 bases:
>100_bases AAACCTCTTGTTAATCTGAGCTTGTGATCTGTCAATGCTTTTCAAATAGTCATTTCCTGATAAGATTTACCGCAACCTAG CAGCACAAGACTCCTTAAAT
Downstream 100 bases:
>100_bases CAGCGCAGAGCTTATAACTCAGTTTTCAGCGCTGACTGACTACCTCAAACCCGGTTGTCAGGTACTCGATCTTGCCTGTG GTAGCGGCCGCAATGGTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MARKELTEKQFMVQRFSKTALRALHILGITGAGGGILLHVPQEQWLLYWIMAMSTGSAMMLWEIVRDWRWLIQLKGVLTL VKLGLLGLFIPFAAYKPELLIAIVLLSVVVSHGPAGLRHFSIVHGRRIGGRKEVKG
Sequences:
>Translated_136_residues MARKELTEKQFMVQRFSKTALRALHILGITGAGGGILLHVPQEQWLLYWIMAMSTGSAMMLWEIVRDWRWLIQLKGVLTL VKLGLLGLFIPFAAYKPELLIAIVLLSVVVSHGPAGLRHFSIVHGRRIGGRKEVKG >Mature_135_residues ARKELTEKQFMVQRFSKTALRALHILGITGAGGGILLHVPQEQWLLYWIMAMSTGSAMMLWEIVRDWRWLIQLKGVLTLV KLGLLGLFIPFAAYKPELLIAIVLLSVVVSHGPAGLRHFSIVHGRRIGGRKEVKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15254; Mature: 15123
Theoretical pI: Translated: 11.41; Mature: 11.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKELTEKQFMVQRFSKTALRALHILGITGAGGGILLHVPQEQWLLYWIMAMSTGSAMM CCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECHHHHHHHHHHHHCCCCHHH LWEIVRDWRWLIQLKGVLTLVKLGLLGLFIPFAAYKPELLIAIVLLSVVVSHGPAGLRHF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHH SIVHGRRIGGRKEVKG HHHHCCCCCCCCCCCC >Mature Secondary Structure ARKELTEKQFMVQRFSKTALRALHILGITGAGGGILLHVPQEQWLLYWIMAMSTGSAMM CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECHHHHHHHHHHHHCCCCHHH LWEIVRDWRWLIQLKGVLTLVKLGLLGLFIPFAAYKPELLIAIVLLSVVVSHGPAGLRHF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHH SIVHGRRIGGRKEVKG HHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA