| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167622729
Identifier: 167622729
GI number: 167622729
Start: 985596
End: 986702
Strand: Direct
Name: 167622729
Synonym: Shal_0789
Alternate gene names: NA
Gene position: 985596-986702 (Clockwise)
Preceding gene: 167622728
Following gene: 167622735
Centisome position: 18.86
GC content: 47.61
Gene sequence:
>1107_bases ATGAAATTTACCCAATCGAGCCTAAAGGTAGGTGAGTTGGCTACGGGGCAGGAGCTTAATGTTCCTGTTTACCGACTTCC TGCACAGGACCTTAGTGCGCCGAGCGTATTTATTCAGGCCAATGTGCATGGCGCCGAGGTGCAAGGTAACGCGGTGATTT TTCAGTTGATGAAGCAGCTGGAGACGATGGATGTTAAGGGGGAAGTGACGTTACTTCCCTTGGCTAACCCGTTAGGGATT AATCAAAAAAGTGGTGAGTTCACCCTTGGGCGTTTCGATCCTATCACTGGGGTTAACTGGAACAGAGAATATCTAGATCA CAAACTCGATGTCGCCAGTTGGTATCAAGAGAATGCTCATCTAGAAGACAAGGCGTTGATCAAGGCATACCGTTTGTTAT TGATTGAGTCATGTCAGGCTCACTTAAATAGTGAGTGGGGCGTGACCACAGGCAAACGCCTTGCGGTGACGCTGCAGTCG ATGGCCCATGCAGCCGATATCGTTATCGATCTGCATACTGGCCCTAAGTCTTGTAAGCATATGTATTGTCCCGAATACGA TGTGGATTCAGCATCGTATTTCTCTATTCCCTTTACTCTTGTGATCCCTAATGATTTTGGTGGCGCCATGGATGAAGCGG TGTTTTGCCCTTGGTGGCAGCTGGCTGACTATGCGCAATCACAGGGACGCACTCTAGGCGTTCCTGTATCTGCATTTACT TTGGAGTTAGCTAGCCAAGAGCGTATCGATATGGATGATGCCCTTAACGATGCTCAGGGGATCTTAGCCTACTTGAGTCA TCGTGGTGTGGTCAGCGATAAAGTTGCACCAGCTCAAATGCCAAGGTACGGCTGTTATCTAAAAGACTATAAGAAGTTTC ATGCGCCAACGGCGGGGATGGTTGAGTATAAAGCTGAGCTGGGTGAGCCATTGCAAACGGGTGAGACTCTGGCAAATATT TTAAGGCTGGATCTGTATGGCACTGATAACGAGTTGACTCCGTTAAGTCTTAAGCAAGATTGTGTGCCTATCCTGCATTT TGCATCAGCTTCTGTCTATCAGGGCACCGAACTCTACAAGGTAATGACCAATCTGTTTGAGCTTTAA
Upstream 100 bases:
>100_bases CCAATGTTATTCGCGCCCTGCATGAAAACCTGTTTGAAGCCTAGATAACAGATAACAGATAACTGCTAACAGATAGAGAT GAAAGGTAACCGAGTCATTG
Downstream 100 bases:
>100_bases CTATGAGCGAGCTCATAATATGTAAAAGGCTAACATCAGTTAGCCTTTTTTATTGTCATCTAGACAAGAGCTAAGGCTTA ACCGCCCGTACGATGGGGTT
Product: succinylglutamate desuccinylase/aspartoacylase
Products: NA
Alternate protein names: Deacylase; Arginine Catabolism Protein; Succinylglutamate Desuccinylase; Amino Acid ABC Transporter-Like Protein; Arginine/Ornithine Transport Operon(AotO) Protein; Succinylglutamate Desuccinylase / Aspartoacylase Family
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MKFTQSSLKVGELATGQELNVPVYRLPAQDLSAPSVFIQANVHGAEVQGNAVIFQLMKQLETMDVKGEVTLLPLANPLGI NQKSGEFTLGRFDPITGVNWNREYLDHKLDVASWYQENAHLEDKALIKAYRLLLIESCQAHLNSEWGVTTGKRLAVTLQS MAHAADIVIDLHTGPKSCKHMYCPEYDVDSASYFSIPFTLVIPNDFGGAMDEAVFCPWWQLADYAQSQGRTLGVPVSAFT LELASQERIDMDDALNDAQGILAYLSHRGVVSDKVAPAQMPRYGCYLKDYKKFHAPTAGMVEYKAELGEPLQTGETLANI LRLDLYGTDNELTPLSLKQDCVPILHFASASVYQGTELYKVMTNLFEL
Sequences:
>Translated_368_residues MKFTQSSLKVGELATGQELNVPVYRLPAQDLSAPSVFIQANVHGAEVQGNAVIFQLMKQLETMDVKGEVTLLPLANPLGI NQKSGEFTLGRFDPITGVNWNREYLDHKLDVASWYQENAHLEDKALIKAYRLLLIESCQAHLNSEWGVTTGKRLAVTLQS MAHAADIVIDLHTGPKSCKHMYCPEYDVDSASYFSIPFTLVIPNDFGGAMDEAVFCPWWQLADYAQSQGRTLGVPVSAFT LELASQERIDMDDALNDAQGILAYLSHRGVVSDKVAPAQMPRYGCYLKDYKKFHAPTAGMVEYKAELGEPLQTGETLANI LRLDLYGTDNELTPLSLKQDCVPILHFASASVYQGTELYKVMTNLFEL >Mature_368_residues MKFTQSSLKVGELATGQELNVPVYRLPAQDLSAPSVFIQANVHGAEVQGNAVIFQLMKQLETMDVKGEVTLLPLANPLGI NQKSGEFTLGRFDPITGVNWNREYLDHKLDVASWYQENAHLEDKALIKAYRLLLIESCQAHLNSEWGVTTGKRLAVTLQS MAHAADIVIDLHTGPKSCKHMYCPEYDVDSASYFSIPFTLVIPNDFGGAMDEAVFCPWWQLADYAQSQGRTLGVPVSAFT LELASQERIDMDDALNDAQGILAYLSHRGVVSDKVAPAQMPRYGCYLKDYKKFHAPTAGMVEYKAELGEPLQTGETLANI LRLDLYGTDNELTPLSLKQDCVPILHFASASVYQGTELYKVMTNLFEL
Specific function: Unknown
COG id: COG3608
COG function: function code R; Predicted deacylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40816; Mature: 40816
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFTQSSLKVGELATGQELNVPVYRLPAQDLSAPSVFIQANVHGAEVQGNAVIFQLMKQL CCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCEEEEEECCCCCEECCCHHHHHHHHHH ETMDVKGEVTLLPLANPLGINQKSGEFTLGRFDPITGVNWNREYLDHKLDVASWYQENAH HHCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC LEDKALIKAYRLLLIESCQAHLNSEWGVTTGKRLAVTLQSMAHAADIVIDLHTGPKSCKH CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCEEEEEEEECCCCHHHCC MYCPEYDVDSASYFSIPFTLVIPNDFGGAMDEAVFCPWWQLADYAQSQGRTLGVPVSAFT CCCCCCCCCCCEEEECEEEEEEECCCCCCHHCCEECCHHHHHHHHHHCCCEEECCHHHHH LELASQERIDMDDALNDAQGILAYLSHRGVVSDKVAPAQMPRYGCYLKDYKKFHAPTAGM EEHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCHH VEYKAELGEPLQTGETLANILRLDLYGTDNELTPLSLKQDCVPILHFASASVYQGTELYK HHHHHHHCCCHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH VMTNLFEL HHHHHHCC >Mature Secondary Structure MKFTQSSLKVGELATGQELNVPVYRLPAQDLSAPSVFIQANVHGAEVQGNAVIFQLMKQL CCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCEEEEEECCCCCEECCCHHHHHHHHHH ETMDVKGEVTLLPLANPLGINQKSGEFTLGRFDPITGVNWNREYLDHKLDVASWYQENAH HHCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC LEDKALIKAYRLLLIESCQAHLNSEWGVTTGKRLAVTLQSMAHAADIVIDLHTGPKSCKH CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCEEEEEEEECCCCHHHCC MYCPEYDVDSASYFSIPFTLVIPNDFGGAMDEAVFCPWWQLADYAQSQGRTLGVPVSAFT CCCCCCCCCCCEEEECEEEEEEECCCCCCHHCCEECCHHHHHHHHHHCCCEEECCHHHHH LELASQERIDMDDALNDAQGILAYLSHRGVVSDKVAPAQMPRYGCYLKDYKKFHAPTAGM EEHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCHH VEYKAELGEPLQTGETLANILRLDLYGTDNELTPLSLKQDCVPILHFASASVYQGTELYK HHHHHHHCCCHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH VMTNLFEL HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA