| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167622722
Identifier: 167622722
GI number: 167622722
Start: 976092
End: 976871
Strand: Direct
Name: 167622722
Synonym: Shal_0782
Alternate gene names: NA
Gene position: 976092-976871 (Clockwise)
Preceding gene: 167622721
Following gene: 167622723
Centisome position: 18.67
GC content: 37.18
Gene sequence:
>780_bases TTGAACAATACAAGTTTCTATAAGTATTGCCCTGTTGATCAAGATGAAAACTTTGAGCAAGAGTATTCACTGATCAATCT TTTTAACTCCGAAGTTACATTCTCAACGAGGAAGAACTTCAATGATCTGTTTGATTCAAAAATCAATTTCATTTCCCCTG ATAGAAGTCAGCTGAAAAAGATAGCAGGAAGCTTGCCTGCTTCAAAGCGAGCTGAATTCAGACGCTTGTATTTAGGTGAA GACTGGCAGGCAAAAATTCGTAAATTTAACGATGACATTGAAAAACTGTTCGACAGTTACCTGTATTACTGCGTCACAGA TTGTGAAACAAGCAATTTGATGTGGTCACACTATGCAAGCTCACACGCTGGCTTTTGTATAGAGTGGGACGCGAACATGG TCAAAGCTGAAAAGGTAACTTATCAAAGTGATATAGCTGATTTTAAGCTTCTCGACCTGATAAAAATTCACTGTGGATCG ATGTCTAAAGATGATGTAGGTATCCGTATCTGGGAATCTCTTCTAATTAAGCTGGATGAATGGGAGTATGAGTCAGAGTA TCGATTTCAAATGAGCCATGCAATGGATCACCTGATTTCGAAGCAGGGAGAAAAATTTGCACTAGTAAAATATCAGCCAG AATGGATTAAATCGATAATATTCGGGTGCAGAACTTCAGATAAGACTAAGTCATACATCAAAGAAAATTTGCCCTATAAG GTAAAGTTTAAACAAGCTTATGTGGCGAAAAGTAGTATTAAGATTCGTAATTTAGAGTGA
Upstream 100 bases:
>100_bases GCCATTTGGTATGGTGTGGTAGCAGCTAGGTTGAATTTTAAACGGAACATTATCGAGCAGCTAGATAATAAGCTGTTATA TCATCCAAGGAAGACAGTAA
Downstream 100 bases:
>100_bases TATAACAAACGCGTGCATTTGACCTCCGCTTCGCTGCGGCAAATGACGCGGGCGTTATACATTCGGAGCAACTAATTGGA AAATAATGAGCTTATAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MNNTSFYKYCPVDQDENFEQEYSLINLFNSEVTFSTRKNFNDLFDSKINFISPDRSQLKKIAGSLPASKRAEFRRLYLGE DWQAKIRKFNDDIEKLFDSYLYYCVTDCETSNLMWSHYASSHAGFCIEWDANMVKAEKVTYQSDIADFKLLDLIKIHCGS MSKDDVGIRIWESLLIKLDEWEYESEYRFQMSHAMDHLISKQGEKFALVKYQPEWIKSIIFGCRTSDKTKSYIKENLPYK VKFKQAYVAKSSIKIRNLE
Sequences:
>Translated_259_residues MNNTSFYKYCPVDQDENFEQEYSLINLFNSEVTFSTRKNFNDLFDSKINFISPDRSQLKKIAGSLPASKRAEFRRLYLGE DWQAKIRKFNDDIEKLFDSYLYYCVTDCETSNLMWSHYASSHAGFCIEWDANMVKAEKVTYQSDIADFKLLDLIKIHCGS MSKDDVGIRIWESLLIKLDEWEYESEYRFQMSHAMDHLISKQGEKFALVKYQPEWIKSIIFGCRTSDKTKSYIKENLPYK VKFKQAYVAKSSIKIRNLE >Mature_259_residues MNNTSFYKYCPVDQDENFEQEYSLINLFNSEVTFSTRKNFNDLFDSKINFISPDRSQLKKIAGSLPASKRAEFRRLYLGE DWQAKIRKFNDDIEKLFDSYLYYCVTDCETSNLMWSHYASSHAGFCIEWDANMVKAEKVTYQSDIADFKLLDLIKIHCGS MSKDDVGIRIWESLLIKLDEWEYESEYRFQMSHAMDHLISKQGEKFALVKYQPEWIKSIIFGCRTSDKTKSYIKENLPYK VKFKQAYVAKSSIKIRNLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30629; Mature: 30629
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNTSFYKYCPVDQDENFEQEYSLINLFNSEVTFSTRKNFNDLFDSKINFISPDRSQLKK CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHCCHHHHHHCCCCCCCCCHHHHHH IAGSLPASKRAEFRRLYLGEDWQAKIRKFNDDIEKLFDSYLYYCVTDCETSNLMWSHYAS HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCHHHHCC SHAGFCIEWDANMVKAEKVTYQSDIADFKLLDLIKIHCGSMSKDDVGIRIWESLLIKLDE CCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC WEYESEYRFQMSHAMDHLISKQGEKFALVKYQPEWIKSIIFGCRTSDKTKSYIKENLPYK CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHCCCEE VKFKQAYVAKSSIKIRNLE EEEHHHHHHHCCEEEECCC >Mature Secondary Structure MNNTSFYKYCPVDQDENFEQEYSLINLFNSEVTFSTRKNFNDLFDSKINFISPDRSQLKK CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHCCHHHHHHCCCCCCCCCHHHHHH IAGSLPASKRAEFRRLYLGEDWQAKIRKFNDDIEKLFDSYLYYCVTDCETSNLMWSHYAS HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCHHHHCC SHAGFCIEWDANMVKAEKVTYQSDIADFKLLDLIKIHCGSMSKDDVGIRIWESLLIKLDE CCCCEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC WEYESEYRFQMSHAMDHLISKQGEKFALVKYQPEWIKSIIFGCRTSDKTKSYIKENLPYK CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHCCCEE VKFKQAYVAKSSIKIRNLE EEEHHHHHHHCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA