| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622702
Identifier: 167622702
GI number: 167622702
Start: 944864
End: 945364
Strand: Direct
Name: 167622702
Synonym: Shal_0762
Alternate gene names: NA
Gene position: 944864-945364 (Clockwise)
Preceding gene: 167622701
Following gene: 167622707
Centisome position: 18.08
GC content: 43.71
Gene sequence:
>501_bases GTGGCTAAGCCCTTTATTGCCGATAATTTCGAGCCACCAAGGTGTTTTGAATCAACATACTTTCACTTCAGAGTATTAGA AGATCAAGTGGCAGCGTTAGACTTTGACGCTGTCATGTCGAGCCAGCAACGACTACAGGGCATTTTTGGCCCAGCATCAG ATTGGCCTCGAAGTGATATGACTTTCGCTGAGAATAGCTTGAGCTTGCAAGTTCATCAGCAGGAGTTTTATTTAGGTAAA GCTTTTGCTTACTCAGTGCTTAATAAATCAAAAGACAAATGCTTGGGCTCTATATACATAGATCCAAGCCAGTCTGCTCA CTATGATTGCGACGTTCACCTTTGGATTCGAGACGACAGTATCGAGTTAGATGAACTGCTGTATCAAACCGTTATTGATT GGCTGGCAGAGAGTTGGCCTTTCGCTAAAGTGGCATTTCCTGGAAGAGCTATCTCATGGGAACTGTGGCATAAAGAGCTA AACTCGCTGCGAAACTCTTAA
Upstream 100 bases:
>100_bases CCACAATGCGCCAATGTGGTAAAGGTGCCTGCGCTGAGAGAAAGCTATCAGCCAGTGGCTAACTGCGGTGAGCCACTGCC TTGGTGGAAGAAACTGATAG
Downstream 100 bases:
>100_bases TAAACAGAAGCTTCGCAGCCAACATTATTTAATGCATTGTGGATTAATGCACAGTGGCTTAATACATTCTGGCTTATAAA ATGGCCACAGCGTAAATAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MAKPFIADNFEPPRCFESTYFHFRVLEDQVAALDFDAVMSSQQRLQGIFGPASDWPRSDMTFAENSLSLQVHQQEFYLGK AFAYSVLNKSKDKCLGSIYIDPSQSAHYDCDVHLWIRDDSIELDELLYQTVIDWLAESWPFAKVAFPGRAISWELWHKEL NSLRNS
Sequences:
>Translated_166_residues MAKPFIADNFEPPRCFESTYFHFRVLEDQVAALDFDAVMSSQQRLQGIFGPASDWPRSDMTFAENSLSLQVHQQEFYLGK AFAYSVLNKSKDKCLGSIYIDPSQSAHYDCDVHLWIRDDSIELDELLYQTVIDWLAESWPFAKVAFPGRAISWELWHKEL NSLRNS >Mature_165_residues AKPFIADNFEPPRCFESTYFHFRVLEDQVAALDFDAVMSSQQRLQGIFGPASDWPRSDMTFAENSLSLQVHQQEFYLGKA FAYSVLNKSKDKCLGSIYIDPSQSAHYDCDVHLWIRDDSIELDELLYQTVIDWLAESWPFAKVAFPGRAISWELWHKELN SLRNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19236; Mature: 19104
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKPFIADNFEPPRCFESTYFHFRVLEDQVAALDFDAVMSSQQRLQGIFGPASDWPRSDM CCCCCCCCCCCCCCHHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC TFAENSLSLQVHQQEFYLGKAFAYSVLNKSKDKCLGSIYIDPSQSAHYDCDVHLWIRDDS EECCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEECCC IELDELLYQTVIDWLAESWPFAKVAFPGRAISWELWHKELNSLRNS CCHHHHHHHHHHHHHHCCCCCEEEECCCCEEHHHHHHHHHHHHCCC >Mature Secondary Structure AKPFIADNFEPPRCFESTYFHFRVLEDQVAALDFDAVMSSQQRLQGIFGPASDWPRSDM CCCCCCCCCCCCCHHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC TFAENSLSLQVHQQEFYLGKAFAYSVLNKSKDKCLGSIYIDPSQSAHYDCDVHLWIRDDS EECCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEECCC IELDELLYQTVIDWLAESWPFAKVAFPGRAISWELWHKELNSLRNS CCHHHHHHHHHHHHHHCCCCCEEEECCCCEEHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA