| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622672
Identifier: 167622672
GI number: 167622672
Start: 909643
End: 911799
Strand: Direct
Name: 167622672
Synonym: Shal_0732
Alternate gene names: NA
Gene position: 909643-911799 (Clockwise)
Preceding gene: 167622671
Following gene: 167622676
Centisome position: 17.4
GC content: 48.86
Gene sequence:
>2157_bases ATGAAAAAATGGCTTTTGACAGCGGCTATCGCAACCTCTTTTGGTGCCGTAGCTGACGAAGGTATGTGGCAGCCTCATCA ACTTCCTGCCATGGCAGACGAACTGAAAGCGAAGGGATTAGAAATTGACGTTAACTCAATTTCAAAACTGACCGAATTTC CAATGAACGCCGTGATCAGCCTTGGCGGCTGTACGGCATCATTTGTATCACCCAAAGGGCTAGTGGTAACTAACCATCAC TGCGCTTACGGCTCAATCCAGTACAACTCAACACCAGAAAACAATCTGCTTCGTGACGGTTTTCTCGCTAAGACATTTGC CGATGAGCTGCCGGCAACCCCAGGCTCGCGTGTCTACGTGACAGAAAGCGTTGTCGATGTGACCGACAAGGTAAAAGATG GCCTTGAAAACAAAATCGGTAATGCGTTTTACAAAGGCGTAGAGCAAAAAGAGAAAGGCTTAGTGGCCGAATGTGAGAAA GAGGACGGTTACCGCTGTAAGGTATACAGCTTCCACGGCGGCCTCGAGTACTACCTAGTTAAGCAGTTAGAAATTCGCGA TGTGCGCCTAGTATATAACCCAGCGGCAAGCGTAGGTAAGTACGGCGGCGATGTCGATAACTGGATGTGGCCACGTCACA CAGGCGACTACTCATTCTACCGCGCCTATGTATCGAAAGATGGCAAGCCTGCAGATTTCAGCAAAGACAACGTGCCATTT GAGCCAAAGAGCTTCTTGAAAGTCTCGGCTAAAGGCGTCAGCGAAGGTGATTTCGTGATGGTCGCAGGCTATCCCGGCCG TACCAACCGTTACCGCACCGCTTACGAAGTGGAAAACCAGTTTGAGTGGTCGTATCCAGAAGGTAAAGTCTTACGTGAGC GCCTAATCGAGATCATCAAAGAAACCGCGCCAGAGGGCAGCGATGAGCGCATCAAGTATGAAAGCTCAATTGCAGGCCTT GCTAACTATGCTAAAAACTTCACCTCGATGATCGAGTTTTACGGCAAATCAACCATGCTTGATGACCGTAAGGCGCTCGA GCAAAAACTGGCTAACTGGATTAATGCTGACAGCAAGCGTAAGCAGCAATACGGTAAAGTGCTCGCAGAGCTGGATAAGT TAATCGCCAAGAGCCAGCAAGACCAAGAGCGTGATCTACTACTAGGCTACATGGGTTACAGCACCATGATGAGCACGGCA AATCGCTTATATCGTCTCGCCAATGAAAAAGCCCTGCCAGATATGGAGCGTGAGCCAGGTTACCAAGACCGTGATATGAC TCGCTTTACCTCGGGCATGGAGCGTATCGAGCGCCGTTATGCGGCCAGTGTTGATAAAGCCATGCTAGCGGATCTCATTA CTCGCTACGCAGCGCTACCGAAAGATCAGCGCCTACCCGCGTTTGATAAAGCCTTTGGGATCACCGATAACTTCGATGCG GCTAAGCTCAACAAGACCCTTGATAAGATGTACGCCAACACATCGCTTTCTGATAAAGAAGTGCGCCTAGCGTGGATGGA GAAGTCTGTAGTTGAGTTCAACAACTCAAAAGACCCGTTCATTCAGTACGCGGTAGCGACTTATGACGAGCGCATGAAGC GTGAAAAAGAGAAAAAGCAGTTAGCGGGTGAGCTAATGAAGGTGCGTCCTATGTATATGGACGCCATCATCGCCTATAAC CGCGAGCTAGGTAAGCCAGTTTACGCCGATGCCAACTCAAGCCTACGTGTGACCGTGGGTCATGTGAAAGGTTACTCACC TGAAGATGGCCTTTACGCAGAGCCGTTTACTCGTTTAGAGGGTATTTTAGCGAAAGACACGGGTGTTGAGCCGTTTAACG CACCGGCTAAAGAGCTAGAGCTTATCGCGAACAAGCAGTACGGTGATTACTATGTAAAGTCTCTGGACTCAGTGCCAGTT AACTTCCTATCGACTCTCGATACCACTGGTGGTAACTCTGGTTCACCCACTTTGAATGGTCGCGCCGAGTTGGTTGGCCT GCTGTTTGACGGTGTGTACGAGAGCATTATCGGTGACTGGGGTTACGATACTGAGACTAACCGTTCTATCCAAGTGGATA GCCGTTATATGCTTTGGGTAATGAAGTACTTAGATAATGCCGATAACCTATTAGAAGAGATGGAAATTGTTAATTAA
Upstream 100 bases:
>100_bases CTGGCTTATCCAAGTGCTATAAATTGAATATCGAGAGACAAGCAATCAACAAAAATTTTAAAAATAATATAAATAAATAA ATAAGAAATGGACTTATAAA
Downstream 100 bases:
>100_bases CCTTATAGACCAAGGTTAGATAGGTCTTTTGGATGCAAAAGCCGAAACATGAAAGTGTTTCGGCTTTTTTGATCTTTGGT GGTTTGTTTGGTGGTGGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MKKWLLTAAIATSFGAVADEGMWQPHQLPAMADELKAKGLEIDVNSISKLTEFPMNAVISLGGCTASFVSPKGLVVTNHH CAYGSIQYNSTPENNLLRDGFLAKTFADELPATPGSRVYVTESVVDVTDKVKDGLENKIGNAFYKGVEQKEKGLVAECEK EDGYRCKVYSFHGGLEYYLVKQLEIRDVRLVYNPAASVGKYGGDVDNWMWPRHTGDYSFYRAYVSKDGKPADFSKDNVPF EPKSFLKVSAKGVSEGDFVMVAGYPGRTNRYRTAYEVENQFEWSYPEGKVLRERLIEIIKETAPEGSDERIKYESSIAGL ANYAKNFTSMIEFYGKSTMLDDRKALEQKLANWINADSKRKQQYGKVLAELDKLIAKSQQDQERDLLLGYMGYSTMMSTA NRLYRLANEKALPDMEREPGYQDRDMTRFTSGMERIERRYAASVDKAMLADLITRYAALPKDQRLPAFDKAFGITDNFDA AKLNKTLDKMYANTSLSDKEVRLAWMEKSVVEFNNSKDPFIQYAVATYDERMKREKEKKQLAGELMKVRPMYMDAIIAYN RELGKPVYADANSSLRVTVGHVKGYSPEDGLYAEPFTRLEGILAKDTGVEPFNAPAKELELIANKQYGDYYVKSLDSVPV NFLSTLDTTGGNSGSPTLNGRAELVGLLFDGVYESIIGDWGYDTETNRSIQVDSRYMLWVMKYLDNADNLLEEMEIVN
Sequences:
>Translated_718_residues MKKWLLTAAIATSFGAVADEGMWQPHQLPAMADELKAKGLEIDVNSISKLTEFPMNAVISLGGCTASFVSPKGLVVTNHH CAYGSIQYNSTPENNLLRDGFLAKTFADELPATPGSRVYVTESVVDVTDKVKDGLENKIGNAFYKGVEQKEKGLVAECEK EDGYRCKVYSFHGGLEYYLVKQLEIRDVRLVYNPAASVGKYGGDVDNWMWPRHTGDYSFYRAYVSKDGKPADFSKDNVPF EPKSFLKVSAKGVSEGDFVMVAGYPGRTNRYRTAYEVENQFEWSYPEGKVLRERLIEIIKETAPEGSDERIKYESSIAGL ANYAKNFTSMIEFYGKSTMLDDRKALEQKLANWINADSKRKQQYGKVLAELDKLIAKSQQDQERDLLLGYMGYSTMMSTA NRLYRLANEKALPDMEREPGYQDRDMTRFTSGMERIERRYAASVDKAMLADLITRYAALPKDQRLPAFDKAFGITDNFDA AKLNKTLDKMYANTSLSDKEVRLAWMEKSVVEFNNSKDPFIQYAVATYDERMKREKEKKQLAGELMKVRPMYMDAIIAYN RELGKPVYADANSSLRVTVGHVKGYSPEDGLYAEPFTRLEGILAKDTGVEPFNAPAKELELIANKQYGDYYVKSLDSVPV NFLSTLDTTGGNSGSPTLNGRAELVGLLFDGVYESIIGDWGYDTETNRSIQVDSRYMLWVMKYLDNADNLLEEMEIVN >Mature_718_residues MKKWLLTAAIATSFGAVADEGMWQPHQLPAMADELKAKGLEIDVNSISKLTEFPMNAVISLGGCTASFVSPKGLVVTNHH CAYGSIQYNSTPENNLLRDGFLAKTFADELPATPGSRVYVTESVVDVTDKVKDGLENKIGNAFYKGVEQKEKGLVAECEK EDGYRCKVYSFHGGLEYYLVKQLEIRDVRLVYNPAASVGKYGGDVDNWMWPRHTGDYSFYRAYVSKDGKPADFSKDNVPF EPKSFLKVSAKGVSEGDFVMVAGYPGRTNRYRTAYEVENQFEWSYPEGKVLRERLIEIIKETAPEGSDERIKYESSIAGL ANYAKNFTSMIEFYGKSTMLDDRKALEQKLANWINADSKRKQQYGKVLAELDKLIAKSQQDQERDLLLGYMGYSTMMSTA NRLYRLANEKALPDMEREPGYQDRDMTRFTSGMERIERRYAASVDKAMLADLITRYAALPKDQRLPAFDKAFGITDNFDA AKLNKTLDKMYANTSLSDKEVRLAWMEKSVVEFNNSKDPFIQYAVATYDERMKREKEKKQLAGELMKVRPMYMDAIIAYN RELGKPVYADANSSLRVTVGHVKGYSPEDGLYAEPFTRLEGILAKDTGVEPFNAPAKELELIANKQYGDYYVKSLDSVPV NFLSTLDTTGGNSGSPTLNGRAELVGLLFDGVYESIIGDWGYDTETNRSIQVDSRYMLWVMKYLDNADNLLEEMEIVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80975; Mature: 80975
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKWLLTAAIATSFGAVADEGMWQPHQLPAMADELKAKGLEIDVNSISKLTEFPMNAVIS CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEHHHHHHHHHCCHHHHEE LGGCTASFVSPKGLVVTNHHCAYGSIQYNSTPENNLLRDGFLAKTFADELPATPGSRVYV CCCCEECCCCCCCEEEECCCCEECEEEECCCCCCCCHHCCHHHHHHHHHCCCCCCCEEEE TESVVDVTDKVKDGLENKIGNAFYKGVEQKEKGLVAECEKEDGYRCKVYSFHGGLEYYLV EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCEEEEE KQLEIRDVRLVYNPAASVGKYGGDVDNWMWPRHTGDYSFYRAYVSKDGKPADFSKDNVPF EEEEEEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC EPKSFLKVSAKGVSEGDFVMVAGYPGRTNRYRTAYEVENQFEWSYPEGKVLRERLIEIIK CCHHHHEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHH ETAPEGSDERIKYESSIAGLANYAKNFTSMIEFYGKSTMLDDRKALEQKLANWINADSKR HHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH KQQYGKVLAELDKLIAKSQQDQERDLLLGYMGYSTMMSTANRLYRLANEKALPDMEREPG HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC YQDRDMTRFTSGMERIERRYAASVDKAMLADLITRYAALPKDQRLPAFDKAFGITDNFDA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCH AKLNKTLDKMYANTSLSDKEVRLAWMEKSVVEFNNSKDPFIQYAVATYDERMKREKEKKQ HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LAGELMKVRPMYMDAIIAYNRELGKPVYADANSSLRVTVGHVKGYSPEDGLYAEPFTRLE HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHH GILAKDTGVEPFNAPAKELELIANKQYGDYYVKSLDSVPVNFLSTLDTTGGNSGSPTLNG HHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCC RAELVGLLFDGVYESIIGDWGYDTETNRSIQVDSRYMLWVMKYLDNADNLLEEMEIVN HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHHCC >Mature Secondary Structure MKKWLLTAAIATSFGAVADEGMWQPHQLPAMADELKAKGLEIDVNSISKLTEFPMNAVIS CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEHHHHHHHHHCCHHHHEE LGGCTASFVSPKGLVVTNHHCAYGSIQYNSTPENNLLRDGFLAKTFADELPATPGSRVYV CCCCEECCCCCCCEEEECCCCEECEEEECCCCCCCCHHCCHHHHHHHHHCCCCCCCEEEE TESVVDVTDKVKDGLENKIGNAFYKGVEQKEKGLVAECEKEDGYRCKVYSFHGGLEYYLV EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCEEEEE KQLEIRDVRLVYNPAASVGKYGGDVDNWMWPRHTGDYSFYRAYVSKDGKPADFSKDNVPF EEEEEEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC EPKSFLKVSAKGVSEGDFVMVAGYPGRTNRYRTAYEVENQFEWSYPEGKVLRERLIEIIK CCHHHHEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHH ETAPEGSDERIKYESSIAGLANYAKNFTSMIEFYGKSTMLDDRKALEQKLANWINADSKR HHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH KQQYGKVLAELDKLIAKSQQDQERDLLLGYMGYSTMMSTANRLYRLANEKALPDMEREPG HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC YQDRDMTRFTSGMERIERRYAASVDKAMLADLITRYAALPKDQRLPAFDKAFGITDNFDA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCH AKLNKTLDKMYANTSLSDKEVRLAWMEKSVVEFNNSKDPFIQYAVATYDERMKREKEKKQ HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LAGELMKVRPMYMDAIIAYNRELGKPVYADANSSLRVTVGHVKGYSPEDGLYAEPFTRLE HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHH GILAKDTGVEPFNAPAKELELIANKQYGDYYVKSLDSVPVNFLSTLDTTGGNSGSPTLNG HHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCC RAELVGLLFDGVYESIIGDWGYDTETNRSIQVDSRYMLWVMKYLDNADNLLEEMEIVN HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA