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The map label for this gene is yafC [C]

Identifier: 167622645

GI number: 167622645

Start: 868115

End: 869026

Strand: Reverse

Name: yafC [C]

Synonym: Shal_0705

Alternate gene names: 167622645

Gene position: 869026-868115 (Counterclockwise)

Preceding gene: 167622647

Following gene: 167622644

Centisome position: 16.63

GC content: 46.27

Gene sequence:

>912_bases
ATGCCTGATTTAAACGGTATGATGCTCTTTGCGGCAGTTGTTAGAGCTAAAGGTTTCTCTCAAGCTGCCCGTGAAATAGG
CATGCCAAAATCAACCATTAGTCGCAAGGTTGCCCAGCTAGAAGAACAGCTCGGCGTGCGACTCTTGCAACGAGACACCC
GTAATCTGAGCCTAACTCAGGTCGGCGCGCTGTTTTTTCAGCATTGCTCCAGTATAAGCGATGAAATAGAGGCTGCCAAA
GCCACAGTAGAGAATACCCATAACGACGTTTCCGGCTTGTTGCGTATCGCAATTCCCGTCTCTTTTAGCCAAGAGTTAAT
TGCCACATTGTGTAGTGGCTTTCTGCGTCTATACCCCAATGTTGAGCTCGACGTGCAGTTTACCGACAGCGACGTGGGTC
TAGTGGGTGAAGGTTATGATATCGCCATTAAATATGGCCCACTACAATCGTCCGATTTAGTGGCAAGACTGTTGTTTGAA
CGTCAACCGATCTTGGTCGCAAGTCCAGGCTACTTAAAAATACATGGTACTCCTGCAACACCTCAAGATTTAGCCGAGCA
CAGTGGTATTTTATTGGGGACGTCACGTTCTGCGCCTATCTGGCCTTTAGGCAAAGGCGCTAGAAAAACCATGGTCAACT
TTCAGCGTAAAGTGCGAGTCAATAGCGCTGTTATGGTTAAACAATTCGTTATGGATGATTTTGGCATCGCCATGTTATCT
AACTCTGTTTGTAAAAACGAATTGGCTAGCGGTTCTCTAGTGCCACTCTTGCAAGAGTGGCCAATGGAAGCATTTAAGGT
TTACGGGGTGTATTCAAGCAGACGACAACTGGCCACTAATATTAGCGCCTTCTTAGACTTCTTCCATAAACGTTTCACCA
GTCAGGAATCTCTGCAATCATTGATGATGTAG

Upstream 100 bases:

>100_bases
CTCTGAAATTTTTAGCCCGTAAATATAACTTTGTTATCCTGTCAATTGCCATTAAACTGCACTAGACGCTTTGTTCCATA
TTTGAGACAGTGGAGATAAC

Downstream 100 bases:

>100_bases
AAGCCTCTCAACTTACCCGCGTCGAGACGCAATAGGATAGCCAACCTAACTATATCGCTAGCGCATAATTCACACGACTT
TCAATGATATTTATTGTGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MPDLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVGALFFQHCSSISDEIEAAK
ATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNVELDVQFTDSDVGLVGEGYDIAIKYGPLQSSDLVARLLFE
RQPILVASPGYLKIHGTPATPQDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKVRVNSAVMVKQFVMDDFGIAMLS
NSVCKNELASGSLVPLLQEWPMEAFKVYGVYSSRRQLATNISAFLDFFHKRFTSQESLQSLMM

Sequences:

>Translated_303_residues
MPDLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVGALFFQHCSSISDEIEAAK
ATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNVELDVQFTDSDVGLVGEGYDIAIKYGPLQSSDLVARLLFE
RQPILVASPGYLKIHGTPATPQDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKVRVNSAVMVKQFVMDDFGIAMLS
NSVCKNELASGSLVPLLQEWPMEAFKVYGVYSSRRQLATNISAFLDFFHKRFTSQESLQSLMM
>Mature_302_residues
PDLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQVGALFFQHCSSISDEIEAAKA
TVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPNVELDVQFTDSDVGLVGEGYDIAIKYGPLQSSDLVARLLFER
QPILVASPGYLKIHGTPATPQDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKVRVNSAVMVKQFVMDDFGIAMLSN
SVCKNELASGSLVPLLQEWPMEAFKVYGVYSSRRQLATNISAFLDFFHKRFTSQESLQSLMM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=35.0694444444444, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=29.4915254237288, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=28.0821917808219, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=28.6195286195286, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=25.6055363321799, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=26.551724137931, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789440, Length=271, Percent_Identity=26.1992619926199, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=26.3779527559055, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=26, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=30.5882352941176, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786448, Length=254, Percent_Identity=25.9842519685039, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=21.4765100671141, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=171, Percent_Identity=25.1461988304094, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33407; Mature: 33276

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQ
CCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VGALFFQHCSSISDEIEAAKATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPN
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCC
VELDVQFTDSDVGLVGEGYDIAIKYGPLQSSDLVARLLFERQPILVASPGYLKIHGTPAT
CEEEEEECCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEEEECCCCC
PQDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKVRVNSAVMVKQFVMDDFGIAMLS
HHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSVCKNELASGSLVPLLQEWPMEAFKVYGVYSSRRQLATNISAFLDFFHKRFTSQESLQS
HHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LMM
HCC
>Mature Secondary Structure 
PDLNGMMLFAAVVRAKGFSQAAREIGMPKSTISRKVAQLEEQLGVRLLQRDTRNLSLTQ
CCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VGALFFQHCSSISDEIEAAKATVENTHNDVSGLLRIAIPVSFSQELIATLCSGFLRLYPN
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCC
VELDVQFTDSDVGLVGEGYDIAIKYGPLQSSDLVARLLFERQPILVASPGYLKIHGTPAT
CEEEEEECCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEEEECCCCC
PQDLAEHSGILLGTSRSAPIWPLGKGARKTMVNFQRKVRVNSAVMVKQFVMDDFGIAMLS
HHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSVCKNELASGSLVPLLQEWPMEAFKVYGVYSSRRQLATNISAFLDFFHKRFTSQESLQS
HHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LMM
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]