| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622644
Identifier: 167622644
GI number: 167622644
Start: 866743
End: 867903
Strand: Reverse
Name: 167622644
Synonym: Shal_0704
Alternate gene names: NA
Gene position: 867903-866743 (Counterclockwise)
Preceding gene: 167622645
Following gene: 167622643
Centisome position: 16.6
GC content: 48.84
Gene sequence:
>1161_bases ATGAAAAAAACTCGTTCAGCACTGCTTCTTAGTGCCTTCACCGCGCTTACGCTGCCTCATAGTGCCTTTGCTACACTCGA CATTGAAGAGTCGAGACTTGCACAAGCGAACCAAGCTATGCCACAGGTAGTCAAGCGCTATCAAGCCTTTGTTGGCGGCT TAGGCGAAAAGTATCGTCAGCATTCCGATGAGCTAAAAGTCACCCAGATGGTAGCCCATCAAGGGCTTAGATTATGGCAA CAAGCGGTGAGAGATGTGCAGTCGGGCCATTTAGATGATCGCTCTCTATATTGGAATCGCCTCGCTATGCGTGAGCTACT CAAGACCCAGAAACCTGACTTCAATATCGCTTCCTGGCAGCAAGAGATCTTGATTAAAGCCGTTGAGAAGTCATCACGTG GTTTTAGCGATCTCGACTTTAAAGACGACGCTCAGATAAGAATTCTACTCACAGGCTTTGACCCTTTTTTTCTCGACCGC AATATAGAACAGAGCAACCCGTCAGGACTCGCAGCGCTGGCACTAGACGGTTACCGCTTTAAGGTCGATGGTAAACAGGC ACAGATAGAGACCGTAATGATCCCAGTGCGCTTTGCCGATTTCGATGAGGGCATGATTGAGTCGCTGCTCACCCCCATCT ATCGTGATAACAGCGTCGATATGATCTTTACCGTCAGTATGGGACGTGATGATTTTGATATCGAACGCTTCCCTGGCCGC AATCGCAGCGCCGCAGCACCCGATAACCTCAATGTGCTAACAGGCGCAAGCAAACAGACACCGATTGCACCTAAATTTAA TGGCGGCAGTTTAAATGGCCCAGAGTTTGTTGAATTCTCTCTGCCTATTACGGCAATGCAAACGGTAAAAGGCCCGTGGA AAGTCAATGACAACCACACGGTTTCAACTCTAGAACAGGGTGAATTTGAAGCCCGCTCCCTAGCGCAACTACAAGCTGCC ACATCGGTAGAGGGTTCTGGTGGAGGTTACCTGTCAAACGAGATCTCATACCGCGCTATATTGCTGCAAAAGCAATTTAA CAGCAGCATTCCTGTAGGGCATATCCACACTCCGCGTATCACCGCTTTTGATGTCAAAACCGAGAGTGCTATCGTGACAC AGGTTAAAGATATGGTGATCACGGCAGCCAGCACTCTCTAA
Upstream 100 bases:
>100_bases AATACAGATCTCAAAAAACAATGTAAAACTGCAACTTACTCTACACTAAGCCTGAAATGGATAAGCTTGTGTTGCAGCAA TAATATCAAAGGAACTGGCA
Downstream 100 bases:
>100_bases ATTGTAACTAGGCTTAATCTAGCTCGTTTGTGTACGCGTGTGCTTAAACGAGCAAGCAAGATAGTTAGACAGTACTTAAA TCAGTAGCAGTGCTCAAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 386; Mature: 386
Protein sequence:
>386_residues MKKTRSALLLSAFTALTLPHSAFATLDIEESRLAQANQAMPQVVKRYQAFVGGLGEKYRQHSDELKVTQMVAHQGLRLWQ QAVRDVQSGHLDDRSLYWNRLAMRELLKTQKPDFNIASWQQEILIKAVEKSSRGFSDLDFKDDAQIRILLTGFDPFFLDR NIEQSNPSGLAALALDGYRFKVDGKQAQIETVMIPVRFADFDEGMIESLLTPIYRDNSVDMIFTVSMGRDDFDIERFPGR NRSAAAPDNLNVLTGASKQTPIAPKFNGGSLNGPEFVEFSLPITAMQTVKGPWKVNDNHTVSTLEQGEFEARSLAQLQAA TSVEGSGGGYLSNEISYRAILLQKQFNSSIPVGHIHTPRITAFDVKTESAIVTQVKDMVITAASTL
Sequences:
>Translated_386_residues MKKTRSALLLSAFTALTLPHSAFATLDIEESRLAQANQAMPQVVKRYQAFVGGLGEKYRQHSDELKVTQMVAHQGLRLWQ QAVRDVQSGHLDDRSLYWNRLAMRELLKTQKPDFNIASWQQEILIKAVEKSSRGFSDLDFKDDAQIRILLTGFDPFFLDR NIEQSNPSGLAALALDGYRFKVDGKQAQIETVMIPVRFADFDEGMIESLLTPIYRDNSVDMIFTVSMGRDDFDIERFPGR NRSAAAPDNLNVLTGASKQTPIAPKFNGGSLNGPEFVEFSLPITAMQTVKGPWKVNDNHTVSTLEQGEFEARSLAQLQAA TSVEGSGGGYLSNEISYRAILLQKQFNSSIPVGHIHTPRITAFDVKTESAIVTQVKDMVITAASTL >Mature_386_residues MKKTRSALLLSAFTALTLPHSAFATLDIEESRLAQANQAMPQVVKRYQAFVGGLGEKYRQHSDELKVTQMVAHQGLRLWQ QAVRDVQSGHLDDRSLYWNRLAMRELLKTQKPDFNIASWQQEILIKAVEKSSRGFSDLDFKDDAQIRILLTGFDPFFLDR NIEQSNPSGLAALALDGYRFKVDGKQAQIETVMIPVRFADFDEGMIESLLTPIYRDNSVDMIFTVSMGRDDFDIERFPGR NRSAAAPDNLNVLTGASKQTPIAPKFNGGSLNGPEFVEFSLPITAMQTVKGPWKVNDNHTVSTLEQGEFEARSLAQLQAA TSVEGSGGGYLSNEISYRAILLQKQFNSSIPVGHIHTPRITAFDVKTESAIVTQVKDMVITAASTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42918; Mature: 42918
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTRSALLLSAFTALTLPHSAFATLDIEESRLAQANQAMPQVVKRYQAFVGGLGEKYRQ CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH HSDELKVTQMVAHQGLRLWQQAVRDVQSGHLDDRSLYWNRLAMRELLKTQKPDFNIASWQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH QEILIKAVEKSSRGFSDLDFKDDAQIRILLTGFDPFFLDRNIEQSNPSGLAALALDGYRF HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCEEEEEECCEEE KVDGKQAQIETVMIPVRFADFDEGMIESLLTPIYRDNSVDMIFTVSMGRDDFDIERFPGR EECCCEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHCCCCC NRSAAAPDNLNVLTGASKQTPIAPKFNGGSLNGPEFVEFSLPITAMQTVKGPWKVNDNHT CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEECCCCE VSTLEQGEFEARSLAQLQAATSVEGSGGGYLSNEISYRAILLQKQFNSSIPVGHIHTPRI EEHHHCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEEEHHCCCCCCCCCCCCCCE TAFDVKTESAIVTQVKDMVITAASTL EEEECCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKTRSALLLSAFTALTLPHSAFATLDIEESRLAQANQAMPQVVKRYQAFVGGLGEKYRQ CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH HSDELKVTQMVAHQGLRLWQQAVRDVQSGHLDDRSLYWNRLAMRELLKTQKPDFNIASWQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH QEILIKAVEKSSRGFSDLDFKDDAQIRILLTGFDPFFLDRNIEQSNPSGLAALALDGYRF HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCCCEEEEEECCEEE KVDGKQAQIETVMIPVRFADFDEGMIESLLTPIYRDNSVDMIFTVSMGRDDFDIERFPGR EECCCEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHCCCCC NRSAAAPDNLNVLTGASKQTPIAPKFNGGSLNGPEFVEFSLPITAMQTVKGPWKVNDNHT CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEECCCCE VSTLEQGEFEARSLAQLQAATSVEGSGGGYLSNEISYRAILLQKQFNSSIPVGHIHTPRI EEHHHCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEEEHHCCCCCCCCCCCCCCE TAFDVKTESAIVTQVKDMVITAASTL EEEECCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]