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The map label for this gene is ygdL [H]

Identifier: 167622618

GI number: 167622618

Start: 836978

End: 837799

Strand: Direct

Name: ygdL [H]

Synonym: Shal_0678

Alternate gene names: 167622618

Gene position: 836978-837799 (Clockwise)

Preceding gene: 167622615

Following gene: 167622619

Centisome position: 16.01

GC content: 48.91

Gene sequence:

>822_bases
TTGAATAATCACACCTTGTCAGACGCTTACTTGAATCGCTTCGCAGGTATCGGTCGTTTATATGGCCAACACGCTTTAAG
CTTTTTTGCACAGGCCCATGTGGTCGTTGTTGGGATCGGCGGTGTTGGCACCTGGGTGGCGGAGTCTTTGGCAAGAAGTG
GTATCGGACAGATCACCCTCATCGATCTGGACGATATCTGTGTGACTAACACCAACAGGCAAGCTCACGCGTTAAAAGAC
ACCATCGGCGAGTCTAAGGTCGAGGTGATGGCGCAGCGCCTAAAACAAATTAACCCTGAGTGTATCGTTAATGAGGTAGA
AGACTTCATTACCCCTGAAAACTTATCTGAATATTTTCAGGGGAAAAAACAGGGCGGTAGCATAGATTACGTGGTGGACT
GTATCGATGCAGTTAAGGCCAAGACAGCTTTAATTGCCTGGTGTAAGCGTCAAAAGCTACCCATTATTACCGTGGGTGGG
GCTGGCGGCCAGATGGACCCGACTCAAGTTCAGGTTGCTGATTTAGCTAAGACTTATCAGGACCCTTTATTGGCAAAAGT
GCGTAACCAATTAAGACGTGAATATAACTTCTCTAAGAATGTGGCTCGCCGCTTTTCAATCGAGGCGGTATTCTCCACTG
AGCAGCTGGTTTACCCACAAGCCGATGGCACTGTATGCAGTACCAAGGCAACGGCTGAAGGCAGTATGAGAATGGATTGC
GCCTCTGGCTTTGGAGCCGTCACCGTAGTGACAGGAACCTTTGGCTTTGTTGCGACGAGTCGGGTACTGACCAAGCTTGC
TGCTAAGGCGAACGCTAAATAA

Upstream 100 bases:

>100_bases
TGGTGCGGTATAATTTTTTAGAGTTTTGCCAGCTTTTAAGATAAAATCTATACGCGGTTTCGCTTTCTATATTTTTGACT
TTTTTACATAGAGTATCATT

Downstream 100 bases:

>100_bases
AAGGCGTTAATTGACAGAAATTAGAACAACAGCTCTGTATTGCAGAGGCGTCCATAGGACGCCTTTTTTATTTTCTGTTT
ATTTTCTATCGCCTTAAACT

Product: UBA/THIF-type NAD/FAD-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNNHTLSDAYLNRFAGIGRLYGQHALSFFAQAHVVVVGIGGVGTWVAESLARSGIGQITLIDLDDICVTNTNRQAHALKD
TIGESKVEVMAQRLKQINPECIVNEVEDFITPENLSEYFQGKKQGGSIDYVVDCIDAVKAKTALIAWCKRQKLPIITVGG
AGGQMDPTQVQVADLAKTYQDPLLAKVRNQLRREYNFSKNVARRFSIEAVFSTEQLVYPQADGTVCSTKATAEGSMRMDC
ASGFGAVTVVTGTFGFVATSRVLTKLAAKANAK

Sequences:

>Translated_273_residues
MNNHTLSDAYLNRFAGIGRLYGQHALSFFAQAHVVVVGIGGVGTWVAESLARSGIGQITLIDLDDICVTNTNRQAHALKD
TIGESKVEVMAQRLKQINPECIVNEVEDFITPENLSEYFQGKKQGGSIDYVVDCIDAVKAKTALIAWCKRQKLPIITVGG
AGGQMDPTQVQVADLAKTYQDPLLAKVRNQLRREYNFSKNVARRFSIEAVFSTEQLVYPQADGTVCSTKATAEGSMRMDC
ASGFGAVTVVTGTFGFVATSRVLTKLAAKANAK
>Mature_273_residues
MNNHTLSDAYLNRFAGIGRLYGQHALSFFAQAHVVVVGIGGVGTWVAESLARSGIGQITLIDLDDICVTNTNRQAHALKD
TIGESKVEVMAQRLKQINPECIVNEVEDFITPENLSEYFQGKKQGGSIDYVVDCIDAVKAKTALIAWCKRQKLPIITVGG
AGGQMDPTQVQVADLAKTYQDPLLAKVRNQLRREYNFSKNVARRFSIEAVFSTEQLVYPQADGTVCSTKATAEGSMRMDC
ASGFGAVTVVTGTFGFVATSRVLTKLAAKANAK

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=265, Percent_Identity=61.1320754716981, Blast_Score=353, Evalue=5e-99,
Organism=Escherichia coli, GI1787048, Length=160, Percent_Identity=32.5, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87082356, Length=148, Percent_Identity=32.4324324324324, Blast_Score=73, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321790, Length=250, Percent_Identity=28, Blast_Score=106, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6322825, Length=222, Percent_Identity=26.5765765765766, Blast_Score=99, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24582879, Length=133, Percent_Identity=30.8270676691729, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24660640, Length=148, Percent_Identity=29.0540540540541, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 29542; Mature: 29542

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNHTLSDAYLNRFAGIGRLYGQHALSFFAQAHVVVVGIGGVGTWVAESLARSGIGQITL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHCCCCEEEE
IDLDDICVTNTNRQAHALKDTIGESKVEVMAQRLKQINPECIVNEVEDFITPENLSEYFQ
EECCCEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHC
GKKQGGSIDYVVDCIDAVKAKTALIAWCKRQKLPIITVGGAGGQMDPTQVQVADLAKTYQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
DPLLAKVRNQLRREYNFSKNVARRFSIEAVFSTEQLVYPQADGTVCSTKATAEGSMRMDC
HHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCEEEEECCCCCEEECCCCCCCCEEEEH
ASGFGAVTVVTGTFGFVATSRVLTKLAAKANAK
HCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNNHTLSDAYLNRFAGIGRLYGQHALSFFAQAHVVVVGIGGVGTWVAESLARSGIGQITL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHCCCCEEEE
IDLDDICVTNTNRQAHALKDTIGESKVEVMAQRLKQINPECIVNEVEDFITPENLSEYFQ
EECCCEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHC
GKKQGGSIDYVVDCIDAVKAKTALIAWCKRQKLPIITVGGAGGQMDPTQVQVADLAKTYQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
DPLLAKVRNQLRREYNFSKNVARRFSIEAVFSTEQLVYPQADGTVCSTKATAEGSMRMDC
HHHHHHHHHHHHHHHCHHHHHHHHHHHHEEECCCEEEEECCCCCEEECCCCCCCCEEEEH
ASGFGAVTVVTGTFGFVATSRVLTKLAAKANAK
HCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]