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The map label for this gene is ssb [H]

Identifier: 167622573

GI number: 167622573

Start: 764872

End: 765543

Strand: Direct

Name: ssb [H]

Synonym: Shal_0633

Alternate gene names: 167622573

Gene position: 764872-765543 (Clockwise)

Preceding gene: 167622572

Following gene: 167622575

Centisome position: 14.63

GC content: 50.89

Gene sequence:

>672_bases
ATGGCTAGTCGTGGTGTCAATAAAGTAATTTTGGTCGGTAATTTAGGACAAGATCCTGAAGTACGTTATATGCCTAACGG
CAATGCCGTAGCCAATATTACCGTGGCGACAAGTGAGTCTTGGAAAGACCAACAAGGTCAGCAGCAAGAGCGTACTGAAT
GGCACCGTGTTGTGATGTTCGGCAAACTAGCTGAAATCACTGGTGAGTATTTACGTAAAGGCTCTCAAGTTTACCTTGAA
GGCAAGCTACAGACTCGTAAGTGGAAAGACCAAAGTGGTCAAGATCGTTACAGCACTGAAGTCGTTGTCGATCAAAGTGG
CAGCATGCAGATGCTGGGTAGCCGTAACCAAAATGCTGGTGCACCAGCACAAGGTGGTAACTCAGGTTATGGTCAGCAGC
CACAACAGCAACAAGGTGGTTATGCTCCTAAGCCGCAACAAGCTCCTCAGCAGCAGGGCGGCTATGCACCTAAGCCACAA
CAGGCTCCAGCTCAGCAAGGTGGTTACCAACAGCAACCACAGCAGCAAGCGCCTCAGCAAGGTGGTTATGCACCTAAGCC
ACAATCAGCTCCAGCTCCGCAGCAAGCGCCACAACAGCGCCCAGCTCCGCAGCCACAGCAGAACTTCACTCCAGATTTGG
ATGATGGCTGGGACGACGATATCCCGTTCTAG

Upstream 100 bases:

>100_bases
CTTATTTAAAAGTAGATGACCATTTCGATTTGAGAGAAGCCAGAGCTGTGTTAGGCTCTGTCGATTAGGTAAAATTTAAT
ATACGTTCCAGGAGATTTCA

Downstream 100 bases:

>100_bases
ATCCCAGTTATTATAGTTATGTAAGATTAACTAGTATAAGTAACCTAAACCCAGTCATTTGATTGGGTTTTTCTTTTTCT
GACACTTTGATTTTAATTCG

Product: single-strand-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVVDQSGSMQMLGSRNQNAGAPAQGGNSGYGQQPQQQQGGYAPKPQQAPQQQGGYAPKPQ
QAPAQQGGYQQQPQQQAPQQGGYAPKPQSAPAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF

Sequences:

>Translated_223_residues
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVVDQSGSMQMLGSRNQNAGAPAQGGNSGYGQQPQQQQGGYAPKPQQAPQQQGGYAPKPQ
QAPAQQGGYQQQPQQQAPQQGGYAPKPQSAPAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF
>Mature_222_residues
ASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEITGEYLRKGSQVYLEG
KLQTRKWKDQSGQDRYSTEVVVDQSGSMQMLGSRNQNAGAPAQGGNSGYGQQPQQQQGGYAPKPQQAPQQQGGYAPKPQQ
APAQQGGYQQQPQQQAPQQGGYAPKPQSAPAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=111, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI1790494, Length=224, Percent_Identity=53.125, Blast_Score=198, Evalue=2e-52,
Organism=Drosophila melanogaster, GI85725234, Length=104, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24647376, Length=104, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 24429; Mature: 24298

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMF
CCCCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHH
GKLAEITGEYLRKGSQVYLEGKLQTRKWKDQSGQDRYSTEVVVDQSGSMQMLGSRNQNAG
HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCC
APAQGGNSGYGQQPQQQQGGYAPKPQQAPQQQGGYAPKPQQAPAQQGGYQQQPQQQAPQQ
CCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHCCCCCCCHHHHCHHH
GGYAPKPQSAPAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMF
CCCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHH
GKLAEITGEYLRKGSQVYLEGKLQTRKWKDQSGQDRYSTEVVVDQSGSMQMLGSRNQNAG
HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCC
APAQGGNSGYGQQPQQQQGGYAPKPQQAPQQQGGYAPKPQQAPAQQGGYQQQPQQQAPQQ
CCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCHHCCCCCCCHHHHCHHH
GGYAPKPQSAPAPQQAPQQRPAPQPQQNFTPDLDDGWDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]