Click here to switch to the map view.

The map label for this gene is regB [H]

Identifier: 167622551

GI number: 167622551

Start: 737694

End: 738998

Strand: Direct

Name: regB [H]

Synonym: Shal_0611

Alternate gene names: 167622551

Gene position: 737694-738998 (Clockwise)

Preceding gene: 167622550

Following gene: 167622552

Centisome position: 14.11

GC content: 50.73

Gene sequence:

>1305_bases
ATGAAAAACCTTGGTTTTAAAAACTTACCCATACGCAACCTTGGCGCGACTGATCAGCTAGCCTTGCTCAGATTTGGCGC
CCTGTTACTCAAGATTGGACTCACCTTTTTTGCCGCTGATACCTTTGGCTTGTCGCATACCAGTCCGGTGCTCTATTGGG
GCATGAGCTTAGAGGCACTCTATTTAGGTGTTACTTTCTGGCACCGTGGTTCGATTGCTCGGTTGAAAAACGGCTTTTTC
ATTGTTTTGCTTATCGATACCCTGTTTTGGATCTCCTGGCTCTATTTTACTGGTGGGGCGACCAATGCCTTTATCTCACT
ACTGCTATTACCGATAGCGATTGCCGCGGTTGTTCTGCCTCAGTGGGCGCCCTGGGCTTTAGCGCTATTGTCGACCCTTG
CCTATAGCTTGATGATTTTTTCGGTGCCAGAGAGCCAGATGAAGCACCATGGTATGGATATGAGCTCCCATTACTTGGGG
ATGTGGTTTAACTTCGTGATCTCGGCATTAGTACTGACCACCAGTGTGGCGTATATTGCCCAGCGAATGCGTAAGCAGGA
AGTTGAGCTCAGTTATATGCGCGAGGCGCAGCTGCGCCAAGAGAGGTTATTGGCACTGGGAACGGCATCGGCGCAGATGG
CGCATCAGATGGCGACTCCTTTAGCTAGCTTGCGTTTGCTGGTGGATGAAGCGGTGGAAGATAGCGTCAGTGATAGTGAG
ATCTTACAGGAGATGAATACGGCGCTGGTGCGCTGTGAGCAGACACTGAACTCTCTGCGCATGGCCACCGAGTCGATTCG
CGAGCAGAAACAAAGCCTACTAACGGCCGATGAGTTGCTGGAAACCCTTAAGCAGCAAGTCTTATTGTTGATGCCTGAGA
TTAACTTGGAGCTTAAGCATGTTAAAAATAACCAAGCAGAAGACTCTGAATCGAGAGCTATCAAGAGCGATGCCAGCCTG
CTTCCGGCTCTGTTGGCTTTAGTTGAAAATGCAGGGAGCGCGAGCCTAGCCCATATCGGTGAGGCTAAAGTGCTGGTATC
GGTTATGGCTGCAACAGACAGAGATCGTCTATGTATCTCGGTGAGGGACTTTGGCGTTGGGATCCCTAAAAAGATGCTAC
TACAGCTAGGACATAAACTTGTCGAGAGTGAGCGTGGTATGGGGATGGCGCTGCTGCTCAGTAATGCAAGCTTCGAACGT
CTGGGTGGGCAGCTACTTTTGGGCTCAGCGAAAGAGGGCGGCACGGTTGCCGAGGTATGTTTCCCGGTTTGGCATGCAGG
CGTCGATGGAGAGTGTCATGACTAA

Upstream 100 bases:

>100_bases
TCTCCCTGTGCGGCTGCTTACTTAAAAGTTGATAATGTAAGAAGCTAATTTCACAAGCGGCAAATATCACAAGTAACGAA
TACCATAAGAACAATAAACG

Downstream 100 bases:

>100_bases
AAAACTACTCATTATTGAGGATGATATCGCCTTAGCGAGTGTGCTTGTCAGGCGCATGACCAAGCAGGGGTTTGAGTGTC
AACAGTGTCATGATGCGACT

Product: histidine kinase

Products: NA

Alternate protein names: Protein prrB [H]

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MKNLGFKNLPIRNLGATDQLALLRFGALLLKIGLTFFAADTFGLSHTSPVLYWGMSLEALYLGVTFWHRGSIARLKNGFF
IVLLIDTLFWISWLYFTGGATNAFISLLLLPIAIAAVVLPQWAPWALALLSTLAYSLMIFSVPESQMKHHGMDMSSHYLG
MWFNFVISALVLTTSVAYIAQRMRKQEVELSYMREAQLRQERLLALGTASAQMAHQMATPLASLRLLVDEAVEDSVSDSE
ILQEMNTALVRCEQTLNSLRMATESIREQKQSLLTADELLETLKQQVLLLMPEINLELKHVKNNQAEDSESRAIKSDASL
LPALLALVENAGSASLAHIGEAKVLVSVMAATDRDRLCISVRDFGVGIPKKMLLQLGHKLVESERGMGMALLLSNASFER
LGGQLLLGSAKEGGTVAEVCFPVWHAGVDGECHD

Sequences:

>Translated_434_residues
MKNLGFKNLPIRNLGATDQLALLRFGALLLKIGLTFFAADTFGLSHTSPVLYWGMSLEALYLGVTFWHRGSIARLKNGFF
IVLLIDTLFWISWLYFTGGATNAFISLLLLPIAIAAVVLPQWAPWALALLSTLAYSLMIFSVPESQMKHHGMDMSSHYLG
MWFNFVISALVLTTSVAYIAQRMRKQEVELSYMREAQLRQERLLALGTASAQMAHQMATPLASLRLLVDEAVEDSVSDSE
ILQEMNTALVRCEQTLNSLRMATESIREQKQSLLTADELLETLKQQVLLLMPEINLELKHVKNNQAEDSESRAIKSDASL
LPALLALVENAGSASLAHIGEAKVLVSVMAATDRDRLCISVRDFGVGIPKKMLLQLGHKLVESERGMGMALLLSNASFER
LGGQLLLGSAKEGGTVAEVCFPVWHAGVDGECHD
>Mature_434_residues
MKNLGFKNLPIRNLGATDQLALLRFGALLLKIGLTFFAADTFGLSHTSPVLYWGMSLEALYLGVTFWHRGSIARLKNGFF
IVLLIDTLFWISWLYFTGGATNAFISLLLLPIAIAAVVLPQWAPWALALLSTLAYSLMIFSVPESQMKHHGMDMSSHYLG
MWFNFVISALVLTTSVAYIAQRMRKQEVELSYMREAQLRQERLLALGTASAQMAHQMATPLASLRLLVDEAVEDSVSDSE
ILQEMNTALVRCEQTLNSLRMATESIREQKQSLLTADELLETLKQQVLLLMPEINLELKHVKNNQAEDSESRAIKSDASL
LPALLALVENAGSASLAHIGEAKVLVSVMAATDRDRLCISVRDFGVGIPKKMLLQLGHKLVESERGMGMALLLSNASFER
LGGQLLLGSAKEGGTVAEVCFPVWHAGVDGECHD

Specific function: Member of the two-component regulatory system RegB/RegA. Involved in the positive regulation of photosynthesis gene expression in response to anaerobiosis. Also involved in positive regulation of the cbbI and cbbII Calvin cycle CO2 fixation operons, as we

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 47774; Mature: 47774

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLGFKNLPIRNLGATDQLALLRFGALLLKIGLTFFAADTFGLSHTSPVLYWGMSLEAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHH
YLGVTFWHRGSIARLKNGFFIVLLIDTLFWISWLYFTGGATNAFISLLLLPIAIAAVVLP
HHHHHHHCCCCHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
QWAPWALALLSTLAYSLMIFSVPESQMKHHGMDMSSHYLGMWFNFVISALVLTTSVAYIA
CCCHHHHHHHHHHHHHHHHEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRMRKQEVELSYMREAQLRQERLLALGTASAQMAHQMATPLASLRLLVDEAVEDSVSDSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILQEMNTALVRCEQTLNSLRMATESIREQKQSLLTADELLETLKQQVLLLMPEINLELKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
VKNNQAEDSESRAIKSDASLLPALLALVENAGSASLAHIGEAKVLVSVMAATDRDRLCIS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCCEEEE
VRDFGVGIPKKMLLQLGHKLVESERGMGMALLLSNASFERLGGQLLLGSAKEGGTVAEVC
EHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCCEEEEECCCCCCHHHHHH
FPVWHAGVDGECHD
HHHHHCCCCCCCCC
>Mature Secondary Structure
MKNLGFKNLPIRNLGATDQLALLRFGALLLKIGLTFFAADTFGLSHTSPVLYWGMSLEAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHH
YLGVTFWHRGSIARLKNGFFIVLLIDTLFWISWLYFTGGATNAFISLLLLPIAIAAVVLP
HHHHHHHCCCCHHHHCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
QWAPWALALLSTLAYSLMIFSVPESQMKHHGMDMSSHYLGMWFNFVISALVLTTSVAYIA
CCCHHHHHHHHHHHHHHHHEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRMRKQEVELSYMREAQLRQERLLALGTASAQMAHQMATPLASLRLLVDEAVEDSVSDSE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILQEMNTALVRCEQTLNSLRMATESIREQKQSLLTADELLETLKQQVLLLMPEINLELKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
VKNNQAEDSESRAIKSDASLLPALLALVENAGSASLAHIGEAKVLVSVMAATDRDRLCIS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCCEEEE
VRDFGVGIPKKMLLQLGHKLVESERGMGMALLLSNASFERLGGQLLLGSAKEGGTVAEVC
EHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCCEEEEECCCCCCHHHHHH
FPVWHAGVDGECHD
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7751278; 10358089 [H]