| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622539
Identifier: 167622539
GI number: 167622539
Start: 722408
End: 722584
Strand: Direct
Name: 167622539
Synonym: Shal_0599
Alternate gene names: NA
Gene position: 722408-722584 (Clockwise)
Preceding gene: 167622538
Following gene: 167622540
Centisome position: 13.82
GC content: 46.89
Gene sequence:
>177_bases ATGTCTTTATCTAAACTGTCAGGACTGTCGTTGGTTTGCGCACTTGTTTTCGGCCTTAGTGCGTGCGCGCCAGAGGTTGG CAGCGAAGCTTGGTGTAAGCAGATGAAAGAAAAGCCATCAGGCGATTGGACGGCTAATGAAGCCGCTGATTATGCAAAGC ATTGTGTATTTAAGTAA
Upstream 100 bases:
>100_bases GCCGCGCGTACCGACCTGTGTGATTAATTTAGATTAAATTTTGGTATCATTAGCCAAGATTGCTTTTTAATGTCGCGAAT AAATATAGAAGGATTTACAA
Downstream 100 bases:
>100_bases ATATCAATAGCTTAGTCGACTCGTATTAAAATGAGAGCGAGTTCACTAAGAGTGAGATAATAGCTTGTTCTTAGTGAACT TTACGTTATGATGCGGGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 58; Mature: 57
Protein sequence:
>58_residues MSLSKLSGLSLVCALVFGLSACAPEVGSEAWCKQMKEKPSGDWTANEAADYAKHCVFK
Sequences:
>Translated_58_residues MSLSKLSGLSLVCALVFGLSACAPEVGSEAWCKQMKEKPSGDWTANEAADYAKHCVFK >Mature_57_residues SLSKLSGLSLVCALVFGLSACAPEVGSEAWCKQMKEKPSGDWTANEAADYAKHCVFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6195; Mature: 6064
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 10.3 %Cys+Met (Translated Protein) 7.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 8.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSKLSGLSLVCALVFGLSACAPEVGSEAWCKQMKEKPSGDWTANEAADYAKHCVFK CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure SLSKLSGLSLVCALVFGLSACAPEVGSEAWCKQMKEKPSGDWTANEAADYAKHCVFK CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA