Click here to switch to the map view.

The map label for this gene is rbsD

Identifier: 167622518

GI number: 167622518

Start: 694732

End: 695151

Strand: Direct

Name: rbsD

Synonym: Shal_0578

Alternate gene names: 167622518

Gene position: 694732-695151 (Clockwise)

Preceding gene: 167622517

Following gene: 167622519

Centisome position: 13.29

GC content: 48.57

Gene sequence:

>420_bases
ATGAACAAACACGCTTTGCTCAATGCAGATATGAATTACCTAGTAGCCACATTGGGGCATACCGATGAGGTCGCCATTTG
TGATGCTGGCTTACCGATCCCTGCTGCAGTGCAGCGCATCGATCTGGCTCTGACCCATGGCGTACCAAGCTTTATTGCTA
CCGTTAAAATCTGGCTAGCAAGCTCACAAATCGAGGGCGTTGTGTTGGCGCAAGAGTTTGCCGATGTTAGCCCTGAGTGT
CATCAAGCGCTATTGGTTGAAATCGAGGCAGAGCAATTAGCAACGGGCCGTACCTTTAGTATTGAATACGTTAGCCATGA
AGCGTTTAAACAGCGCACTCACAATAGCCGCGCGGTGATCCGTACCGGTGAGTGTACGCCCTATGCCAATGTGATTTTTA
AAACCGGTGTTGTATTTTAA

Upstream 100 bases:

>100_bases
TCGATTAGTCTTGTCCTGTCTTATCGAAACGTTTCGATCGAATGGCTTTGCGGTAAAGAATATCTGCCGTGATGCATATA
AAAATACTTTAGGTTGATAG

Downstream 100 bases:

>100_bases
GCTTATCGGAGTCACGTATGACCCAAGCAATATTGCAGTTACAAGCGATTGAAAAGTCTTTCCCCGGGGTTAAAGCCCTA
GATAAAGCTAGCTTAAATGT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MNKHALLNADMNYLVATLGHTDEVAICDAGLPIPAAVQRIDLALTHGVPSFIATVKIWLASSQIEGVVLAQEFADVSPEC
HQALLVEIEAEQLATGRTFSIEYVSHEAFKQRTHNSRAVIRTGECTPYANVIFKTGVVF

Sequences:

>Translated_139_residues
MNKHALLNADMNYLVATLGHTDEVAICDAGLPIPAAVQRIDLALTHGVPSFIATVKIWLASSQIEGVVLAQEFADVSPEC
HQALLVEIEAEQLATGRTFSIEYVSHEAFKQRTHNSRAVIRTGECTPYANVIFKTGVVF
>Mature_139_residues
MNKHALLNADMNYLVATLGHTDEVAICDAGLPIPAAVQRIDLALTHGVPSFIATVKIWLASSQIEGVVLAQEFADVSPEC
HQALLVEIEAEQLATGRTFSIEYVSHEAFKQRTHNSRAVIRTGECTPYANVIFKTGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.7625899280576, Blast_Score=147, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_SHEHH (B0TS18)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001672812.1
- ProteinModelPortal:   B0TS18
- SMR:   B0TS18
- GeneID:   5906255
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_0578
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   SHAL458817:SHAL_0578-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15133; Mature: 15133

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKHALLNADMNYLVATLGHTDEVAICDAGLPIPAAVQRIDLALTHGVPSFIATVKIWLA
CCCCEEEECCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHEEE
SSQIEGVVLAQEFADVSPECHQALLVEIEAEQLATGRTFSIEYVSHEAFKQRTHNSRAVI
CCCCCEEEEEHHHHCCCHHHCEEEEEEEEHHHHCCCCEEEEEEHHHHHHHHHCCCCCEEE
RTGECTPYANVIFKTGVVF
EECCCCCHHHHHEECCCCC
>Mature Secondary Structure
MNKHALLNADMNYLVATLGHTDEVAICDAGLPIPAAVQRIDLALTHGVPSFIATVKIWLA
CCCCEEEECCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHEEE
SSQIEGVVLAQEFADVSPECHQALLVEIEAEQLATGRTFSIEYVSHEAFKQRTHNSRAVI
CCCCCEEEEEHHHHCCCHHHCEEEEEEEEHHHHCCCCEEEEEEHHHHHHHHHCCCCCEEE
RTGECTPYANVIFKTGVVF
EECCCCCHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA