Click here to switch to the map view.

The map label for this gene is nosD [H]

Identifier: 167622498

GI number: 167622498

Start: 670704

End: 672062

Strand: Direct

Name: nosD [H]

Synonym: Shal_0558

Alternate gene names: 167622498

Gene position: 670704-672062 (Clockwise)

Preceding gene: 167622497

Following gene: 167622499

Centisome position: 12.83

GC content: 50.18

Gene sequence:

>1359_bases
ATGAAGAAACTCATGAAAAATTGTGGCTCAGAGCTGGCGCGTAACAGTTTGAGAAAGGCAGCGAAACAGGTCTGCCTTAG
CACTTGGTTCTGCCTGTTTGTTAGCCCGCTTACCGTCGCGGCGAACTACTCGGTGTCGAACGCCGAAGGCCTTAAACAGC
AACTGTTGATGGTTAAAGCGGGCGACACCGTTGTTTTAAAGGCGGGTGAATATTCTGGCCATTTTGAGATCCATCAGCCC
ATCATGCTAATGGGTGAAAAGGGCGCGATTATCGATGCCCAAGGCAGTGGTAGCGCCATTAGTGTGTTTGTTTCGGATGT
CACCATCTCCAACTTACAAGTTCAAAACTGGGGCGCTGATCTCTATGAGCTCGACTCCGGCATCTTGGTACAAGATAACG
CCGACCGTGTACGTATCGAGTCGAGTCACCTTAAAGGTGATGGCTTTGGGATCTATTCGGAAAATAGCAAGCATATTACC
GTGGTGAATAATGTCATCACTGGCAACCCCGCGCTGTATAAGCTCGACAGGGGCGATGGCGTTTATCTCAAGGGGGTCGA
TGCACCTGTGGTGCATGACAACAAAATTTCCCATGTTAGGGATGGTGTCTATCTGGAAACCAGCACTAACAGCCTAGTGT
TCGATAACCGCTTCCACTCTGCACAGTATGGTATTCACTACATGTATACCAAGCATGATGAAGGCTATGGCAACGAGGTG
GATAACGTCGATGGTGGCTACGCCATCATGAGCTCAGAGTTCGTTAACCTACATCAAAATCAGGCCTCCAATACCTTAGA
CTTTGGCGTGCTGCTCAATATCAGTAACCACTGCATCGTGAGTCATAACCGCTTATCGCTGGGGCATAACCCACAAGGCA
CGGCTGAGCTTGGCAATGAGGGTAAAGGGATTTTTATCTACGGCGCCCGCGATAATGAAGTGAGCCATAACCTGTTCTCC
ACCAGTGACATCGGTATCTATATGGCGATGGGCGGTGAGAAGAATAAGGTTTACGGTAATCAGTTTGTCAATAATAAGAC
CCAAGTGAAATACGTGGGCGACTCGCTCTTAGAGTGGAGTCATCAAGGACGTGGGAATTACTGGAGCGGTTATATGGGCT
GGGATGCAAACCATGACGGCATCGCCGATAAACCTTACCGCCCTAACGACAGCCTCGATAAGCTATTTTGGCTCTATCCT
GAGGCGCGTTTCCTGATGAACAGCCCCGTGGTTGCGCTGCTACGTTGGGTGCAAGGCCAATTTGAAGTCGGCGCCGCTAC
AGGCATTGTCGACAGCTTTCCCCTGATCAGTGCGGGCAGCACTGGCAGTACAGGTAGCGTCTATAGGGCGCAGTACTGA

Upstream 100 bases:

>100_bases
TCTCCCATATGAAAAAATTGATATCGCCCTGTTAGCGGGCGAATAGTTGTAGGTGAGTGGTTACTTACCATGGTTGCTTA
CAATGGTTAGTTACTAAATT

Downstream 100 bases:

>100_bases
TGAGCACAGCCACCCCACAACCTAGGGGCAATCATAGGAGCAGAGCAGAGACCACAATGTCAGAACTCGCAATACAGCTA
ACCGATGTTAGCCTTAAATA

Product: periplasmic copper-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MKKLMKNCGSELARNSLRKAAKQVCLSTWFCLFVSPLTVAANYSVSNAEGLKQQLLMVKAGDTVVLKAGEYSGHFEIHQP
IMLMGEKGAIIDAQGSGSAISVFVSDVTISNLQVQNWGADLYELDSGILVQDNADRVRIESSHLKGDGFGIYSENSKHIT
VVNNVITGNPALYKLDRGDGVYLKGVDAPVVHDNKISHVRDGVYLETSTNSLVFDNRFHSAQYGIHYMYTKHDEGYGNEV
DNVDGGYAIMSSEFVNLHQNQASNTLDFGVLLNISNHCIVSHNRLSLGHNPQGTAELGNEGKGIFIYGARDNEVSHNLFS
TSDIGIYMAMGGEKNKVYGNQFVNNKTQVKYVGDSLLEWSHQGRGNYWSGYMGWDANHDGIADKPYRPNDSLDKLFWLYP
EARFLMNSPVVALLRWVQGQFEVGAATGIVDSFPLISAGSTGSTGSVYRAQY

Sequences:

>Translated_452_residues
MKKLMKNCGSELARNSLRKAAKQVCLSTWFCLFVSPLTVAANYSVSNAEGLKQQLLMVKAGDTVVLKAGEYSGHFEIHQP
IMLMGEKGAIIDAQGSGSAISVFVSDVTISNLQVQNWGADLYELDSGILVQDNADRVRIESSHLKGDGFGIYSENSKHIT
VVNNVITGNPALYKLDRGDGVYLKGVDAPVVHDNKISHVRDGVYLETSTNSLVFDNRFHSAQYGIHYMYTKHDEGYGNEV
DNVDGGYAIMSSEFVNLHQNQASNTLDFGVLLNISNHCIVSHNRLSLGHNPQGTAELGNEGKGIFIYGARDNEVSHNLFS
TSDIGIYMAMGGEKNKVYGNQFVNNKTQVKYVGDSLLEWSHQGRGNYWSGYMGWDANHDGIADKPYRPNDSLDKLFWLYP
EARFLMNSPVVALLRWVQGQFEVGAATGIVDSFPLISAGSTGSTGSVYRAQY
>Mature_452_residues
MKKLMKNCGSELARNSLRKAAKQVCLSTWFCLFVSPLTVAANYSVSNAEGLKQQLLMVKAGDTVVLKAGEYSGHFEIHQP
IMLMGEKGAIIDAQGSGSAISVFVSDVTISNLQVQNWGADLYELDSGILVQDNADRVRIESSHLKGDGFGIYSENSKHIT
VVNNVITGNPALYKLDRGDGVYLKGVDAPVVHDNKISHVRDGVYLETSTNSLVFDNRFHSAQYGIHYMYTKHDEGYGNEV
DNVDGGYAIMSSEFVNLHQNQASNTLDFGVLLNISNHCIVSHNRLSLGHNPQGTAELGNEGKGIFIYGARDNEVSHNLFS
TSDIGIYMAMGGEKNKVYGNQFVNNKTQVKYVGDSLLEWSHQGRGNYWSGYMGWDANHDGIADKPYRPNDSLDKLFWLYP
EARFLMNSPVVALLRWVQGQFEVGAATGIVDSFPLISAGSTGSTGSVYRAQY

Specific function: Involved in copper processing and transport; in the assembly of the copper chromophores of nitrous oxide reductase [H]

COG id: COG3420

COG function: function code P; Nitrous oxidase accessory protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR007742
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF05048 NosD [H]

EC number: NA

Molecular weight: Translated: 49653; Mature: 49653

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLMKNCGSELARNSLRKAAKQVCLSTWFCLFVSPLTVAANYSVSNAEGLKQQLLMVKA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHEEEEEEC
GDTVVLKAGEYSGHFEIHQPIMLMGEKGAIIDAQGSGSAISVFVSDVTISNLQVQNWGAD
CCEEEEEECCCCCEEEECCCEEEECCCCCEEECCCCCCEEEEEEEEEEEEEEEEECCCCC
LYELDSGILVQDNADRVRIESSHLKGDGFGIYSENSKHITVVNNVITGNPALYKLDRGDG
CEECCCCEEEECCCCEEEEECCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCE
VYLKGVDAPVVHDNKISHVRDGVYLETSTNSLVFDNRFHSAQYGIHYMYTKHDEGYGNEV
EEEEECCCCEEECCCHHHHHCCEEEEECCCCEEEECCCCCCCCCEEEEEEECCCCCCCCC
DNVDGGYAIMSSEFVNLHQNQASNTLDFGVLLNISNHCIVSHNRLSLGHNPQGTAELGNE
CCCCCCEEEEEHHHHHHHHCCCCCCEEEEEEEEECCCEEEECCEEECCCCCCCCHHCCCC
GKGIFIYGARDNEVSHNLFSTSDIGIYMAMGGEKNKVYGNQFVNNKTQVKYVGDSLLEWS
CCEEEEEECCCCCCCCCEECCCCCEEEEEECCCCCEECCCHHCCCCEEEEECCHHHHHHH
HQGRGNYWSGYMGWDANHDGIADKPYRPNDSLDKLFWLYPEARFLMNSPVVALLRWVQGQ
CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHCCC
FEVGAATGIVDSFPLISAGSTGSTGSVYRAQY
EEECHHHCCCCCCCEEECCCCCCCCCEEEECC
>Mature Secondary Structure
MKKLMKNCGSELARNSLRKAAKQVCLSTWFCLFVSPLTVAANYSVSNAEGLKQQLLMVKA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHEEEEEEC
GDTVVLKAGEYSGHFEIHQPIMLMGEKGAIIDAQGSGSAISVFVSDVTISNLQVQNWGAD
CCEEEEEECCCCCEEEECCCEEEECCCCCEEECCCCCCEEEEEEEEEEEEEEEEECCCCC
LYELDSGILVQDNADRVRIESSHLKGDGFGIYSENSKHITVVNNVITGNPALYKLDRGDG
CEECCCCEEEECCCCEEEEECCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCE
VYLKGVDAPVVHDNKISHVRDGVYLETSTNSLVFDNRFHSAQYGIHYMYTKHDEGYGNEV
EEEEECCCCEEECCCHHHHHCCEEEEECCCCEEEECCCCCCCCCEEEEEEECCCCCCCCC
DNVDGGYAIMSSEFVNLHQNQASNTLDFGVLLNISNHCIVSHNRLSLGHNPQGTAELGNE
CCCCCCEEEEEHHHHHHHHCCCCCCEEEEEEEEECCCEEEECCEEECCCCCCCCHHCCCC
GKGIFIYGARDNEVSHNLFSTSDIGIYMAMGGEKNKVYGNQFVNNKTQVKYVGDSLLEWS
CCEEEEEECCCCCCCCCEECCCCCEEEEEECCCCCEECCCHHCCCCEEEEECCHHHHHHH
HQGRGNYWSGYMGWDANHDGIADKPYRPNDSLDKLFWLYPEARFLMNSPVVALLRWVQGQ
CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHCCC
FEVGAATGIVDSFPLISAGSTGSTGSVYRAQY
EEECHHHCCCCCCCEEECCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]