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The map label for this gene is yoaB [H]

Identifier: 167622482

GI number: 167622482

Start: 652389

End: 652742

Strand: Direct

Name: yoaB [H]

Synonym: Shal_0542

Alternate gene names: 167622482

Gene position: 652389-652742 (Clockwise)

Preceding gene: 167622480

Following gene: 167622483

Centisome position: 12.48

GC content: 48.59

Gene sequence:

>354_bases
ATGACGATAGAAAGAATTGAAACCGCCGCCCGAATGAGCCGTATTGTTAAACACAATGGCACCGTCTACCTATGTGGTCA
GGTGGCTAAGGATGCTGAGCAAGGTATTGCCGAGCAGACACGTACCATGTTGGAAAAGGTTGATAGCCTACTAGAGCAAG
CAGGCAGTGACAGAGAGCATATTCTGTCAGCAACAATTTACATTAAAGATATGCAGTATTTTGCTGAGATGAATGAAGTT
TGGGACGCATGGGTACCAGCAGGGCACGCACCCGCCCGCGCTTGTGTTGAAGCTAAGATGGCCCGCGATGCGCTATTGGT
TGAGATCTCTGTCGTTGCAGCCGAAAAAGCTTAA

Upstream 100 bases:

>100_bases
GACCCCTTAAATATTTTTCAGCGATAAATCAGATGCTAATCAATAGAATCTTATTTAGAATGACACTAACAATCCAATTA
ATTGAGTAGCAGAGTTAAAA

Downstream 100 bases:

>100_bases
TCATAGACAGCCTTCATTACCGAGGTGAAAGCTCACTTCGGTAATTCTCTCTTCTGCTTTTAACCCCTGCTCTTCGCGCG
AATTCTATCCCCGAGTTCTC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MTIERIETAARMSRIVKHNGTVYLCGQVAKDAEQGIAEQTRTMLEKVDSLLEQAGSDREHILSATIYIKDMQYFAEMNEV
WDAWVPAGHAPARACVEAKMARDALLVEISVVAAEKA

Sequences:

>Translated_117_residues
MTIERIETAARMSRIVKHNGTVYLCGQVAKDAEQGIAEQTRTMLEKVDSLLEQAGSDREHILSATIYIKDMQYFAEMNEV
WDAWVPAGHAPARACVEAKMARDALLVEISVVAAEKA
>Mature_116_residues
TIERIETAARMSRIVKHNGTVYLCGQVAKDAEQGIAEQTRTMLEKVDSLLEQAGSDREHILSATIYIKDMQYFAEMNEVW
DAWVPAGHAPARACVEAKMARDALLVEISVVAAEKA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=46.4912280701754, Blast_Score=103, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12964; Mature: 12833

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIERIETAARMSRIVKHNGTVYLCGQVAKDAEQGIAEQTRTMLEKVDSLLEQAGSDREH
CCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILSATIYIKDMQYFAEMNEVWDAWVPAGHAPARACVEAKMARDALLVEISVVAAEKA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TIERIETAARMSRIVKHNGTVYLCGQVAKDAEQGIAEQTRTMLEKVDSLLEQAGSDREH
CHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ILSATIYIKDMQYFAEMNEVWDAWVPAGHAPARACVEAKMARDALLVEISVVAAEKA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]