| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622466
Identifier: 167622466
GI number: 167622466
Start: 635495
End: 636106
Strand: Reverse
Name: 167622466
Synonym: Shal_0526
Alternate gene names: NA
Gene position: 636106-635495 (Counterclockwise)
Preceding gene: 167622467
Following gene: 167622465
Centisome position: 12.17
GC content: 37.09
Gene sequence:
>612_bases TTGACTATCAATGAAATTATTACATTAATTAAAGATATAGTATTGGGTTTATGTGCTTTAGGAACAGTATCTGTAGCTGT TTATGGAGTAAAAAATTGGGCTCGAGAGTTAAAGGGGAAAGCAGATTTCGAAGTGTCTAGACAGCTTATCCGTGCTGTAT ATAAATTTAGAGATGAGATTGAGTATTCTCGTTCTCCAATGACTTTACCCAGTGAATTTCCAGCAAACTATGATCCAATG AATAGAGCAGCAAAATACAAAGCAGAGTCTTGGTCATATGTGTTCTCTAATAGATGGAAGCCTGTGGTTGAAGCTGTACA GGAATTGGAGGTACAGGGTTTAGAAGCAGAAGCTCTATGGGGGGCTGAGATTAAACAACTTGTGCAAGAACTTAGAAAGA ATGCACGATTGTTACGTGTTGGAATGCAGGCAGTTGTTGATAACGAAATGCAGGATAATGAAAACTTCAAGTGTAACTCT GACTTAGGTAAAACGATGAAAAATCGTGTTTGGAAATCGATGTTTGAAGAAAATGATGAGATCACAGTGGCTATAAACTC AACGGTTGAAAAGTTAGAAAATTATGTTCGCCCGCATTTAAAACGCAACTAA
Upstream 100 bases:
>100_bases GGTTTTTAAGTAAAATACATAACATAAATGGATAAGCCGCCAAAAGCGCTGCTTCGCAGCAACTAGTTCATTAACTCAGC GTTAGTATGGAGAATATTCT
Downstream 100 bases:
>100_bases ATAAGACTATTTGTTATGGCTTAGTAAAATGGCCACTATTTCATAGTTAATATCTATGTTTAGCATAGTCAGATGCTTAT CTAAACAAGTGACAATACCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MTINEIITLIKDIVLGLCALGTVSVAVYGVKNWARELKGKADFEVSRQLIRAVYKFRDEIEYSRSPMTLPSEFPANYDPM NRAAKYKAESWSYVFSNRWKPVVEAVQELEVQGLEAEALWGAEIKQLVQELRKNARLLRVGMQAVVDNEMQDNENFKCNS DLGKTMKNRVWKSMFEENDEITVAINSTVEKLENYVRPHLKRN
Sequences:
>Translated_203_residues MTINEIITLIKDIVLGLCALGTVSVAVYGVKNWARELKGKADFEVSRQLIRAVYKFRDEIEYSRSPMTLPSEFPANYDPM NRAAKYKAESWSYVFSNRWKPVVEAVQELEVQGLEAEALWGAEIKQLVQELRKNARLLRVGMQAVVDNEMQDNENFKCNS DLGKTMKNRVWKSMFEENDEITVAINSTVEKLENYVRPHLKRN >Mature_202_residues TINEIITLIKDIVLGLCALGTVSVAVYGVKNWARELKGKADFEVSRQLIRAVYKFRDEIEYSRSPMTLPSEFPANYDPMN RAAKYKAESWSYVFSNRWKPVVEAVQELEVQGLEAEALWGAEIKQLVQELRKNARLLRVGMQAVVDNEMQDNENFKCNSD LGKTMKNRVWKSMFEENDEITVAINSTVEKLENYVRPHLKRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23438; Mature: 23307
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTINEIITLIKDIVLGLCALGTVSVAVYGVKNWARELKGKADFEVSRQLIRAVYKFRDEI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH EYSRSPMTLPSEFPANYDPMNRAAKYKAESWSYVFSNRWKPVVEAVQELEVQGLEAEALW HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH GAEIKQLVQELRKNARLLRVGMQAVVDNEMQDNENFKCNSDLGKTMKNRVWKSMFEENDE HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC ITVAINSTVEKLENYVRPHLKRN EEEEEHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TINEIITLIKDIVLGLCALGTVSVAVYGVKNWARELKGKADFEVSRQLIRAVYKFRDEI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH EYSRSPMTLPSEFPANYDPMNRAAKYKAESWSYVFSNRWKPVVEAVQELEVQGLEAEALW HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH GAEIKQLVQELRKNARLLRVGMQAVVDNEMQDNENFKCNSDLGKTMKNRVWKSMFEENDE HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC ITVAINSTVEKLENYVRPHLKRN EEEEEHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA