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The map label for this gene is 167622457

Identifier: 167622457

GI number: 167622457

Start: 624205

End: 625347

Strand: Direct

Name: 167622457

Synonym: Shal_0517

Alternate gene names: NA

Gene position: 624205-625347 (Clockwise)

Preceding gene: 167622456

Following gene: 167622460

Centisome position: 11.94

GC content: 38.58

Gene sequence:

>1143_bases
ATGGAAAGTTGGTCAGCACACCATTTAAATAAAAAAGCATTAGAAACATTAAGTAACGACGAAGTAAAAGACTTAACTTT
TTACGCTAGGAACTTAATCAGTAAAAATACTCCTGTAATCTTCACGCTCAAACACCTCTCTGAAATTATGGAGAAGAGAT
ACACATTTTTACGTAGTACCGTCGAAAGGAAACGAGAGCACAGCAATTACAAAATGTTCTCGATTAGTAAACGTTCGGGT
GGCCGCAGATTCATACACGCAGTATCAAACCAACTACAGCCCGTTCAACAATGGATAAACACCGAAATTTTACAAAAACA
AAAGCCACACAATGCCTCCTTTGCTTTTCATGCTAATGGGGGCATAAAAAAGTGTGCTGCTATGCATTGTGGTGCAAGGT
GGATCCTAAAATTCGATATCTCTAATTTCTTTTATTGCATCAATGAAACTGATGTTTACCAATTTTTTGTATCCCTAGGT
TACAGGCCATTGTTAGCTTTTGAACTGGCAAGAATATGCACGACTTTACGCCTACCAATACAACATCAAAAATACATCCG
AAGTCGAAACTCATCACGCTTGGAATATAAGTTCTATTACCAACCCGAAGGATGCCGAGGCGTGTTACCTCAAGGAGCGC
CAACTAGCCCAATGCTCTCTAACTTAATTGCAACCAAGCTTGATGAACAACTAACACAATACGCTCTTGAAAATGGTTTT
ACTTACACTCGTTATGCAGATGATTTAGCCTTTTCTGCTATTGATCTTCCCGAGAAAAAAAGCATTGGTAAAATTCAATT
TGAAATTACAGGCATAATGAAAGCGCAAGGGTTCAAAGAAAACGAAAAAAAAACTTCCGTAGCAGGTCCTGGCTCTAAAA
AGATGATACTAGGATTACTTGTTGATGGTGAACAGCCTCGCCTATCTAAACAAATGTATAAAAAGCTCGACAGATATTTA
TATGCCATCGAAAAGTTTGGGCTGGACAGCGTTGCAACACATGAAAAATTCGATTCTACCTTTGGTTTTTACAATCATTT
ATGCGGCTACATCTCATTCGTAAAAAGCGTGGATGCTCCCAGAGGGGAAGAGTTTGAAAAAAGAATGAATAACATTACTC
CACCATGGACCTCGCATCCTTAG

Upstream 100 bases:

>100_bases
GCAATGGCGGCTTCGCCGCCCTAGTATGTCATCTCTCAGTATCCATCGAAGACTCGGTAGAGAGACGACATACTAGGCCC
TTGGGCAAAAGGTAAAGTGA

Downstream 100 bases:

>100_bases
GCTAATTAAGCAGCTAAAACGTAAGCGGTTAGTTACCCACCGAATGGTAAGTCCCTAGAACAGTAGACACTTCCATCGTC
CATTCACCGCAGTGTTTAGT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: EC86-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MESWSAHHLNKKALETLSNDEVKDLTFYARNLISKNTPVIFTLKHLSEIMEKRYTFLRSTVERKREHSNYKMFSISKRSG
GRRFIHAVSNQLQPVQQWINTEILQKQKPHNASFAFHANGGIKKCAAMHCGARWILKFDISNFFYCINETDVYQFFVSLG
YRPLLAFELARICTTLRLPIQHQKYIRSRNSSRLEYKFYYQPEGCRGVLPQGAPTSPMLSNLIATKLDEQLTQYALENGF
TYTRYADDLAFSAIDLPEKKSIGKIQFEITGIMKAQGFKENEKKTSVAGPGSKKMILGLLVDGEQPRLSKQMYKKLDRYL
YAIEKFGLDSVATHEKFDSTFGFYNHLCGYISFVKSVDAPRGEEFEKRMNNITPPWTSHP

Sequences:

>Translated_380_residues
MESWSAHHLNKKALETLSNDEVKDLTFYARNLISKNTPVIFTLKHLSEIMEKRYTFLRSTVERKREHSNYKMFSISKRSG
GRRFIHAVSNQLQPVQQWINTEILQKQKPHNASFAFHANGGIKKCAAMHCGARWILKFDISNFFYCINETDVYQFFVSLG
YRPLLAFELARICTTLRLPIQHQKYIRSRNSSRLEYKFYYQPEGCRGVLPQGAPTSPMLSNLIATKLDEQLTQYALENGF
TYTRYADDLAFSAIDLPEKKSIGKIQFEITGIMKAQGFKENEKKTSVAGPGSKKMILGLLVDGEQPRLSKQMYKKLDRYL
YAIEKFGLDSVATHEKFDSTFGFYNHLCGYISFVKSVDAPRGEEFEKRMNNITPPWTSHP
>Mature_380_residues
MESWSAHHLNKKALETLSNDEVKDLTFYARNLISKNTPVIFTLKHLSEIMEKRYTFLRSTVERKREHSNYKMFSISKRSG
GRRFIHAVSNQLQPVQQWINTEILQKQKPHNASFAFHANGGIKKCAAMHCGARWILKFDISNFFYCINETDVYQFFVSLG
YRPLLAFELARICTTLRLPIQHQKYIRSRNSSRLEYKFYYQPEGCRGVLPQGAPTSPMLSNLIATKLDEQLTQYALENGF
TYTRYADDLAFSAIDLPEKKSIGKIQFEITGIMKAQGFKENEKKTSVAGPGSKKMILGLLVDGEQPRLSKQMYKKLDRYL
YAIEKFGLDSVATHEKFDSTFGFYNHLCGYISFVKSVDAPRGEEFEKRMNNITPPWTSHP

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 43902; Mature: 43902

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESWSAHHLNKKALETLSNDEVKDLTFYARNLISKNTPVIFTLKHLSEIMEKRYTFLRST
CCCCCCHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHH
VERKREHSNYKMFSISKRSGGRRFIHAVSNQLQPVQQWINTEILQKQKPHNASFAFHANG
HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
GIKKCAAMHCGARWILKFDISNFFYCINETDVYQFFVSLGYRPLLAFELARICTTLRLPI
CHHHHHHHHCCCEEEEEEECCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCH
QHQKYIRSRNSSRLEYKFYYQPEGCRGVLPQGAPTSPMLSNLIATKLDEQLTQYALENGF
HHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
TYTRYADDLAFSAIDLPEKKSIGKIQFEITGIMKAQGFKENEKKTSVAGPGSKKMILGLL
EEEEEHHHHHHHHCCCCCCCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEE
VDGEQPRLSKQMYKKLDRYLYAIEKFGLDSVATHEKFDSTFGFYNHLCGYISFVKSVDAP
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RGEEFEKRMNNITPPWTSHP
CCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MESWSAHHLNKKALETLSNDEVKDLTFYARNLISKNTPVIFTLKHLSEIMEKRYTFLRST
CCCCCCHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHH
VERKREHSNYKMFSISKRSGGRRFIHAVSNQLQPVQQWINTEILQKQKPHNASFAFHANG
HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
GIKKCAAMHCGARWILKFDISNFFYCINETDVYQFFVSLGYRPLLAFELARICTTLRLPI
CHHHHHHHHCCCEEEEEEECCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCH
QHQKYIRSRNSSRLEYKFYYQPEGCRGVLPQGAPTSPMLSNLIATKLDEQLTQYALENGF
HHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
TYTRYADDLAFSAIDLPEKKSIGKIQFEITGIMKAQGFKENEKKTSVAGPGSKKMILGLL
EEEEEHHHHHHHHCCCCCCCCCCEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEE
VDGEQPRLSKQMYKKLDRYLYAIEKFGLDSVATHEKFDSTFGFYNHLCGYISFVKSVDAP
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RGEEFEKRMNNITPPWTSHP
CCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2466573; 1722556 [H]