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The map label for this gene is ltrA [H]

Identifier: 167622444

GI number: 167622444

Start: 608594

End: 609541

Strand: Reverse

Name: ltrA [H]

Synonym: Shal_0504

Alternate gene names: 167622444

Gene position: 609541-608594 (Counterclockwise)

Preceding gene: 167622448

Following gene: 167622442

Centisome position: 11.66

GC content: 47.89

Gene sequence:

>948_bases
ATGATAGATCTCAATCGCATCCAAATGTTTGCCCAAGTCGTCGAGCAAGGCAGTTTTACTCGAGCAGCCAACGCCTTAGG
TCTGACTAAGGCTACCGTGAGCCGAAAAGTCGCCGAGCTGGAAGCCGATGCTGGGGTGCAGTTACTGCATCGGACCACTC
GCGCACTTAAGCTCACCGAGGCCGGAGCCGACTACTTTCATCGTGTAAACCGGATCTTAACGGATCTTAAAAATGCCGAA
GATCAGCTCAGTGCTCGGCAGCAGACGATTAAGGGCCACCTTAAGATTGTCTGCCCAATCGAGATGGGTCAGCTCTATTT
TGGGCGGGTCTTCGCCCAGTTTCTGGCGCTCTACCCCGATATCACCATCGAAGCCGAGCTGACTAATAGACAGGTAGATG
TGATAGCTGAAGGGGTTGATCTATTGTTTCAGATCACCGCAGAAACCGATGATAGATTAAAAAGTTACGCCCTTATCAAT
ACCCCAAAAATCTTAATGGCAAGCCCTGAGTATCTCGATAAATTCGGCGAGCCCACAACCCCAGAGCAGTTACAGGAGCA
TCAATGTATCCGTATTAGCTCGCCCCATATTGACGGTAACTGGACACTGTTTAATGGCAAAGAATGGGTGACGATAGAGC
CGGAATCGAGACTTGAGACCAACAATATTACCCTGATGCGCGAAGCAGCATTAGAAGGGTTAGGCATTGCTGCCATTCCT
TTAGTGATTGCAAACGATGCCCTAGAGAAAGGGAAGCTCGTAACGGTACTGAATGACTTTCCGATGAAACAAAGTCTGGT
CACCATGAGCATGCCACAGCGAGTGTACCTGCCACGGCGTTACCGTGTGTTTATCGAGTTCCTCTATCAAGCATTATTTA
ATAACTGGCAAGATAAAGTACTAGATCTACCTGATTTTATCGAACGCCCCGAATTCAATAATAATTAA

Upstream 100 bases:

>100_bases
AGACATGATTGACTCCTTGATTAGTGAGTCATAGTTTACTACTGTCTCAGTATATTTATTAGATAGCTAAAAAATCACCC
ACTGTTTCACAGGTGTAACA

Downstream 100 bases:

>100_bases
GAGTAGAAAAAAGGCGCTAGATAAACTCTATTCAAAATCAGCAGAAAACTATCTCGAATAGAGGTTAAATCGCGCCTCAA
AAAGTCATGGGCTAACTATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIDLNRIQMFAQVVEQGSFTRAANALGLTKATVSRKVAELEADAGVQLLHRTTRALKLTEAGADYFHRVNRILTDLKNAE
DQLSARQQTIKGHLKIVCPIEMGQLYFGRVFAQFLALYPDITIEAELTNRQVDVIAEGVDLLFQITAETDDRLKSYALIN
TPKILMASPEYLDKFGEPTTPEQLQEHQCIRISSPHIDGNWTLFNGKEWVTIEPESRLETNNITLMREAALEGLGIAAIP
LVIANDALEKGKLVTVLNDFPMKQSLVTMSMPQRVYLPRRYRVFIEFLYQALFNNWQDKVLDLPDFIERPEFNNN

Sequences:

>Translated_315_residues
MIDLNRIQMFAQVVEQGSFTRAANALGLTKATVSRKVAELEADAGVQLLHRTTRALKLTEAGADYFHRVNRILTDLKNAE
DQLSARQQTIKGHLKIVCPIEMGQLYFGRVFAQFLALYPDITIEAELTNRQVDVIAEGVDLLFQITAETDDRLKSYALIN
TPKILMASPEYLDKFGEPTTPEQLQEHQCIRISSPHIDGNWTLFNGKEWVTIEPESRLETNNITLMREAALEGLGIAAIP
LVIANDALEKGKLVTVLNDFPMKQSLVTMSMPQRVYLPRRYRVFIEFLYQALFNNWQDKVLDLPDFIERPEFNNN
>Mature_315_residues
MIDLNRIQMFAQVVEQGSFTRAANALGLTKATVSRKVAELEADAGVQLLHRTTRALKLTEAGADYFHRVNRILTDLKNAE
DQLSARQQTIKGHLKIVCPIEMGQLYFGRVFAQFLALYPDITIEAELTNRQVDVIAEGVDLLFQITAETDDRLKSYALIN
TPKILMASPEYLDKFGEPTTPEQLQEHQCIRISSPHIDGNWTLFNGKEWVTIEPESRLETNNITLMREAALEGLGIAAIP
LVIANDALEKGKLVTVLNDFPMKQSLVTMSMPQRVYLPRRYRVFIEFLYQALFNNWQDKVLDLPDFIERPEFNNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=32.0819112627986, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=30.4195804195804, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=29, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=30.7958477508651, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=29.5138888888889, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787589, Length=282, Percent_Identity=28.7234042553192, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=25, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=28.515625, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=32.5, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790011, Length=262, Percent_Identity=25.9541984732824, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788706, Length=284, Percent_Identity=23.2394366197183, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=26.3736263736264, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=24.5901639344262, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=115, Percent_Identity=35.6521739130435, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI145693105, Length=258, Percent_Identity=24.4186046511628, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35840; Mature: 35840

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLNRIQMFAQVVEQGSFTRAANALGLTKATVSRKVAELEADAGVQLLHRTTRALKLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AGADYFHRVNRILTDLKNAEDQLSARQQTIKGHLKIVCPIEMGQLYFGRVFAQFLALYPD
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHCCC
ITIEAELTNRQVDVIAEGVDLLFQITAETDDRLKSYALINTPKILMASPEYLDKFGEPTT
CEEEEEECCCHHHHHHHCCCEEEEEECCCHHHHHHEEEECCCEEEEECHHHHHHCCCCCC
PEQLQEHQCIRISSPHIDGNWTLFNGKEWVTIEPESRLETNNITLMREAALEGLGIAAIP
HHHHHCCCEEEEECCCCCCCEEEECCCEEEEECCHHCCCCCCEEEEHHHHHCCCCHHHHH
LVIANDALEKGKLVTVLNDFPMKQSLVTMSMPQRVYLPRRYRVFIEFLYQALFNNWQDKV
HHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHCCHHHHH
LDLPDFIERPEFNNN
CCCHHHHHCCCCCCC
>Mature Secondary Structure
MIDLNRIQMFAQVVEQGSFTRAANALGLTKATVSRKVAELEADAGVQLLHRTTRALKLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
AGADYFHRVNRILTDLKNAEDQLSARQQTIKGHLKIVCPIEMGQLYFGRVFAQFLALYPD
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHCCC
ITIEAELTNRQVDVIAEGVDLLFQITAETDDRLKSYALINTPKILMASPEYLDKFGEPTT
CEEEEEECCCHHHHHHHCCCEEEEEECCCHHHHHHEEEECCCEEEEECHHHHHHCCCCCC
PEQLQEHQCIRISSPHIDGNWTLFNGKEWVTIEPESRLETNNITLMREAALEGLGIAAIP
HHHHHCCCEEEEECCCCCCCEEEECCCEEEEECCHHCCCCCCEEEEHHHHHCCCCHHHHH
LVIANDALEKGKLVTVLNDFPMKQSLVTMSMPQRVYLPRRYRVFIEFLYQALFNNWQDKV
HHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHCCHHHHH
LDLPDFIERPEFNNN
CCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]