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The map label for this gene is ppdD [H]

Identifier: 167622411

GI number: 167622411

Start: 558537

End: 558989

Strand: Reverse

Name: ppdD [H]

Synonym: Shal_0471

Alternate gene names: 167622411

Gene position: 558989-558537 (Counterclockwise)

Preceding gene: 167622412

Following gene: 167622410

Centisome position: 10.69

GC content: 41.5

Gene sequence:

>453_bases
ATGAAAAGCATGATGAAATCAAACATGAATAACGCTAAGGGCTTCACCCTAATTGAATTAATGATCGTAGTTGCGATTAT
CGGTATTTTGGCAGCGATTGCATTGCCTGCTTATCAGGATTACACAAAGAAAGCTAAATTTGCTGAAGTTGTGACATCTG
TTGGTGCAGCAAGATCTGCTGTGGAACTTTGCTTCCAAACAGAAGGGGCGCTGGCAAATTGTGATGCTGGCTATAGAGGT
ATTCCAGCAGCTGTCGTTACAACTACTTATGAAAACCTCGATACTATGGGGATTGCAAATGGCGTTATTACCGCTGTAGG
TACAGCAGGTGTAGATTCAGCTAACTATATAGCAACACCTACAATTGCAGATGGAGAGACAGTACTAACATGGACTGCAA
CTTCAACAACTACCCCAAGTTGTATAGATAAAGGCTGGTGTTCAGAATTCTAA

Upstream 100 bases:

>100_bases
TGACCATTAGCACAAGGAGTCGCGACATGCTAGCGCAGGAGCATCGAGCAGGGTTGAAGCACTAGCTTACTGATATAACC
GCTTTCTAATGGAGATAGAC

Downstream 100 bases:

>100_bases
GAAAGCTTAGATGAAAGGATAACCACAATAAATTTTGGTTATCCTTTCATTACTTTTAAGCGATACAATATTTTATGCCT
ACAACAGGTCTCCACCTAGG

Product: prepilin peptidase dependent protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKSMMKSNMNNAKGFTLIELMIVVAIIGILAAIALPAYQDYTKKAKFAEVVTSVGAARSAVELCFQTEGALANCDAGYRG
IPAAVVTTTYENLDTMGIANGVITAVGTAGVDSANYIATPTIADGETVLTWTATSTTTPSCIDKGWCSEF

Sequences:

>Translated_150_residues
MKSMMKSNMNNAKGFTLIELMIVVAIIGILAAIALPAYQDYTKKAKFAEVVTSVGAARSAVELCFQTEGALANCDAGYRG
IPAAVVTTTYENLDTMGIANGVITAVGTAGVDSANYIATPTIADGETVLTWTATSTTTPSCIDKGWCSEF
>Mature_150_residues
MKSMMKSNMNNAKGFTLIELMIVVAIIGILAAIALPAYQDYTKKAKFAEVVTSVGAARSAVELCFQTEGALANCDAGYRG
IPAAVVTTTYENLDTMGIANGVITAVGTAGVDSANYIATPTIADGETVLTWTATSTTTPSCIDKGWCSEF

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=124, Percent_Identity=39.5161290322581, Blast_Score=97, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 15632; Mature: 15632

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSMMKSNMNNAKGFTLIELMIVVAIIGILAAIALPAYQDYTKKAKFAEVVTSVGAARSA
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELCFQTEGALANCDAGYRGIPAAVVTTTYENLDTMGIANGVITAVGTAGVDSANYIATP
HHHHHHCCCCEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEECC
TIADGETVLTWTATSTTTPSCIDKGWCSEF
CCCCCCEEEEEECCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MKSMMKSNMNNAKGFTLIELMIVVAIIGILAAIALPAYQDYTKKAKFAEVVTSVGAARSA
CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VELCFQTEGALANCDAGYRGIPAAVVTTTYENLDTMGIANGVITAVGTAGVDSANYIATP
HHHHHHCCCCEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEECC
TIADGETVLTWTATSTTTPSCIDKGWCSEF
CCCCCCEEEEEECCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]