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The map label for this gene is tapC [H]

Identifier: 167622409

GI number: 167622409

Start: 555448

End: 556710

Strand: Reverse

Name: tapC [H]

Synonym: Shal_0469

Alternate gene names: 167622409

Gene position: 556710-555448 (Counterclockwise)

Preceding gene: 167622410

Following gene: 167622408

Centisome position: 10.65

GC content: 47.74

Gene sequence:

>1263_bases
ATGGCGACGGCAACAATGAAAACTAAAAAGCCCAGTGCCAAGAAAACAAAAAACCAACCCAAAGTCCTCACCTTTCAGTG
GAAAGGCACCAATCGCGATGGCGCTAAAACATCTGGCGAGCTAAGAGGCGTATCGAGCGCCGAGATCCGTGCACAACTTA
AAGCTCAAGGTGTCGTTCCAAAAAACGTTCGTAAAAAGTCGGCACCGCTGTTTAAGTCAGAGAAAAAAATCAAACCCATG
GATATCGCCATGATGACTCGCCAGATAGCCACCATGCTGGCTGCAGGCGTACCTATTGTGACGACTCTCGAGCTGCTTGG
TAAAGGCCATGAAAAAGCCAAGATGCGAGAACTACTTGCCACCATCGTCAACGATGTACAATCGGGCATACCTCTCTCTG
ACTCTTTAAGACCCCATAGAAAATATTTTGATGATCTCTATGTCGATCTGGTCGCAGCGGGTGAACACTCCGGCTCACTG
GATGCGGTATTTGACAGAATTGCGACTTACCGAGAAAAATCTGAGGCACTAAAATCAAAAATTAAGAAGGCGATGTTCTA
CCCCGCCGCCGTGGTTATCGTCGCTATTATGGTAACAGCCTTACTGCTGCTATTTGTCGTTCCCCAGTTTGAGGATATTT
TTAACGGCTTTGGCGCAGAACTCCCTGCATTTACACAATTCATCATTAGCATATCTCGCTGGCTACAGGCTTCTTGGTAC
ATCTTTGTGATCGCCATTATCGTTGGCATTTGGAGCTTTAGGCGCGCGCACCTTAATTCACAAAAATTCAGGGATAGGGT
GGATGAGTTTGTACTAAAAATACCTGCCATCGGCGATATCTTGCACAAAGGCGCCATGGCACGTTTCGCTCGCACCCTAG
CAACCACCTTTGCCGCTGGTGTGCCGTTAATCGATGGTCTAGAGTCGGCAGCAGGCGCATCGGGTAATGCGGTCTATCGT
AAAGCTATTTTAAAAATTCGCACCGAAGTGATGTCGGGCATGCAGATGAATGTCGCCATGCGCACCACGGGGTTGTTTCC
CGACATGCTGATCCAGATGGTGATGATCGGTGAAGAGTCGGGATCACTTGATAATATGCTCAATAAAGTCGCTAATATCT
ACGAAATGCAGGTCGATGATGCCGTCGATGGCTTATCAAGCCTAATCGAGCCCGTTATGATGGTGGTTATCGGTACCGTG
GTAGGCGGCCTTATTGTGGGTATGTACCTACCTATTTTCGAAATGGGTAATGTAGTAGGATGA

Upstream 100 bases:

>100_bases
GGTGATTCAAGGTGTTACCAGTATCGCTGAAATAAACCGTGTCACCAGTTTTTAGTCCCTCCTATTTTAACGATAACACC
ATATATCAAAAGGATACCTT

Downstream 100 bases:

>100_bases
TGAATCGAAAATCTCAACCGCATTCACCCTAGCGAGCCAATCATAATCTTGGTCGCTTTTAGAATTTAAGAAAAATAATG
ACTGAACTAATTTCTGTTTT

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MATATMKTKKPSAKKTKNQPKVLTFQWKGTNRDGAKTSGELRGVSSAEIRAQLKAQGVVPKNVRKKSAPLFKSEKKIKPM
DIAMMTRQIATMLAAGVPIVTTLELLGKGHEKAKMRELLATIVNDVQSGIPLSDSLRPHRKYFDDLYVDLVAAGEHSGSL
DAVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAIMVTALLLLFVVPQFEDIFNGFGAELPAFTQFIISISRWLQASWY
IFVIAIIVGIWSFRRAHLNSQKFRDRVDEFVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYR
KAILKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPVMMVVIGTV
VGGLIVGMYLPIFEMGNVVG

Sequences:

>Translated_420_residues
MATATMKTKKPSAKKTKNQPKVLTFQWKGTNRDGAKTSGELRGVSSAEIRAQLKAQGVVPKNVRKKSAPLFKSEKKIKPM
DIAMMTRQIATMLAAGVPIVTTLELLGKGHEKAKMRELLATIVNDVQSGIPLSDSLRPHRKYFDDLYVDLVAAGEHSGSL
DAVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAIMVTALLLLFVVPQFEDIFNGFGAELPAFTQFIISISRWLQASWY
IFVIAIIVGIWSFRRAHLNSQKFRDRVDEFVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYR
KAILKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPVMMVVIGTV
VGGLIVGMYLPIFEMGNVVG
>Mature_419_residues
ATATMKTKKPSAKKTKNQPKVLTFQWKGTNRDGAKTSGELRGVSSAEIRAQLKAQGVVPKNVRKKSAPLFKSEKKIKPMD
IAMMTRQIATMLAAGVPIVTTLELLGKGHEKAKMRELLATIVNDVQSGIPLSDSLRPHRKYFDDLYVDLVAAGEHSGSLD
AVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAIMVTALLLLFVVPQFEDIFNGFGAELPAFTQFIISISRWLQASWYI
FVIAIIVGIWSFRRAHLNSQKFRDRVDEFVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRK
AILKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPVMMVVIGTVV
GGLIVGMYLPIFEMGNVVG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=404, Percent_Identity=26.980198019802, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1786295, Length=401, Percent_Identity=28.1795511221945, Blast_Score=177, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 46008; Mature: 45877

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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>Mature Secondary Structure 
ATATMKTKKPSAKKTKNQPKVLTFQWKGTNRDGAKTSGELRGVSSAEIRAQLKAQGVVP
CCCCCCCCCCCCHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
KNVRKKSAPLFKSEKKIKPMDIAMMTRQIATMLAAGVPIVTTLELLGKGHEKAKMRELLA
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
TIVNDVQSGIPLSDSLRPHRKYFDDLYVDLVAAGEHSGSLDAVFDRIATYREKSEALKSK
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IKKAMFYPAAVVIVAIMVTALLLLFVVPQFEDIFNGFGAELPAFTQFIISISRWLQASWY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
IFVIAIIVGIWSFRRAHLNSQKFRDRVDEFVLKIPAIGDILHKGAMARFARTLATTFAAG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
VPLIDGLESAAGASGNAVYRKAILKIRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEES
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCC
GSLDNMLNKVANIYEMQVDDAVDGLSSLIEPVMMVVIGTVVGGLIVGMYLPIFEMGNVVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]