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The map label for this gene is yacF [C]

Identifier: 167622406

GI number: 167622406

Start: 553082

End: 553816

Strand: Reverse

Name: yacF [C]

Synonym: Shal_0466

Alternate gene names: 167622406

Gene position: 553816-553082 (Counterclockwise)

Preceding gene: 167622407

Following gene: 167622405

Centisome position: 10.6

GC content: 43.81

Gene sequence:

>735_bases
ATGACTGAATTGATCTATGAACAGCCTTTGAACGAAAAAACTCGTAGCTACCTGCGCCTAGAATACTTGGCACAACAGCT
ACAGGCTAACCTAGATCAAGATCATCAGCACCGTTGTTTTTACCCTCTCTTCTCTTTATGCGAACTCACCGAGCGTTGTG
ATTACCGTGGCGAAGTCATCAAGGACTTAGATAGACAACTATTTGCATTATCAAAATGGCAATCACTGCCTTCAATAAAT
GATGAGCAAGTTGAACTATATATCTCAAAATTAAGTACTTGCAGAGACATATTACAAGCCTCTCAACGGCCCGGCCACGA
GTTAAAGCAAGATCGTTTCCTATCAGCCCTAAGGCAAAGGTTCAATATGCCCGGTGCCAGTTGTAATTTCGACTTGCCAC
AGCTCCATTACTGGTTAGCTAAACCTTGGGAAGTTCGCCAGAGTGAATATCAAGATTGGGTAGGCCACTTTGCGAGCTTA
CTTGCACCTGTAAATTTACTTCTAGATTTAACCAGACAGACAACGGAATACCAAGTAAAACAGGCAAGCGGGGGCTTTTA
TCAAGGTAGTAGTGAGCAGGCCTTATCTCTAATACGAGTCAAGCTCTCAGCGGAGCAAGGCTGTTATCCAACCATAAGCG
GCCATAGAAACCGCTACGCAATCCACTTTGTACAGTTTGATCAACAGAAACATTCTGACCAAGCTATCGAATTCGAGTTG
GCAACCTGCAGCTAA

Upstream 100 bases:

>100_bases
ATGTCATAGACAATCAAGGAGAGATATCGGCGTTAAAGTGCAAGGTAGAAGCACTACATAACTTTTATTTAAAATTATCC
AGTAATTCTTGAATAACGCC

Downstream 100 bases:

>100_bases
CACTTTAAAATCTACTAATACACTTTTAAGCGTCAGCCCCCTAACTGACAAGGTTCATTATGTCTTTAACCGTAAAATGC
CCAACATGCCAAGCACCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTELIYEQPLNEKTRSYLRLEYLAQQLQANLDQDHQHRCFYPLFSLCELTERCDYRGEVIKDLDRQLFALSKWQSLPSIN
DEQVELYISKLSTCRDILQASQRPGHELKQDRFLSALRQRFNMPGASCNFDLPQLHYWLAKPWEVRQSEYQDWVGHFASL
LAPVNLLLDLTRQTTEYQVKQASGGFYQGSSEQALSLIRVKLSAEQGCYPTISGHRNRYAIHFVQFDQQKHSDQAIEFEL
ATCS

Sequences:

>Translated_244_residues
MTELIYEQPLNEKTRSYLRLEYLAQQLQANLDQDHQHRCFYPLFSLCELTERCDYRGEVIKDLDRQLFALSKWQSLPSIN
DEQVELYISKLSTCRDILQASQRPGHELKQDRFLSALRQRFNMPGASCNFDLPQLHYWLAKPWEVRQSEYQDWVGHFASL
LAPVNLLLDLTRQTTEYQVKQASGGFYQGSSEQALSLIRVKLSAEQGCYPTISGHRNRYAIHFVQFDQQKHSDQAIEFEL
ATCS
>Mature_243_residues
TELIYEQPLNEKTRSYLRLEYLAQQLQANLDQDHQHRCFYPLFSLCELTERCDYRGEVIKDLDRQLFALSKWQSLPSIND
EQVELYISKLSTCRDILQASQRPGHELKQDRFLSALRQRFNMPGASCNFDLPQLHYWLAKPWEVRQSEYQDWVGHFASLL
APVNLLLDLTRQTTEYQVKQASGGFYQGSSEQALSLIRVKLSAEQGCYPTISGHRNRYAIHFVQFDQQKHSDQAIEFELA
TCS

Specific function: Unknown

COG id: COG4582

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0289 family [H]

Homologues:

Organism=Escherichia coli, GI1786291, Length=246, Percent_Identity=36.5853658536585, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009777 [H]

Pfam domain/function: PF07072 DUF1342 [H]

EC number: NA

Molecular weight: Translated: 28546; Mature: 28415

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELIYEQPLNEKTRSYLRLEYLAQQLQANLDQDHQHRCFYPLFSLCELTERCDYRGEVI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
KDLDRQLFALSKWQSLPSINDEQVELYISKLSTCRDILQASQRPGHELKQDRFLSALRQR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FNMPGASCNFDLPQLHYWLAKPWEVRQSEYQDWVGHFASLLAPVNLLLDLTRQTTEYQVK
HCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QASGGFYQGSSEQALSLIRVKLSAEQGCYPTISGHRNRYAIHFVQFDQQKHSDQAIEFEL
HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEE
ATCS
ECCC
>Mature Secondary Structure 
TELIYEQPLNEKTRSYLRLEYLAQQLQANLDQDHQHRCFYPLFSLCELTERCDYRGEVI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
KDLDRQLFALSKWQSLPSINDEQVELYISKLSTCRDILQASQRPGHELKQDRFLSALRQR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FNMPGASCNFDLPQLHYWLAKPWEVRQSEYQDWVGHFASLLAPVNLLLDLTRQTTEYQVK
HCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QASGGFYQGSSEQALSLIRVKLSAEQGCYPTISGHRNRYAIHFVQFDQQKHSDQAIEFEL
HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEE
ATCS
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]