Click here to switch to the map view.

The map label for this gene is yeaV [H]

Identifier: 167622350

GI number: 167622350

Start: 480682

End: 482274

Strand: Reverse

Name: yeaV [H]

Synonym: Shal_0410

Alternate gene names: 167622350

Gene position: 482274-480682 (Counterclockwise)

Preceding gene: 167622355

Following gene: 167622349

Centisome position: 9.23

GC content: 46.52

Gene sequence:

>1593_bases
GTGACTGATATAACAACGACCCCCGTGACAGACGAAACTGTTACTCAGCAATCCCCAGTTCAAAATGATAAAGTTCAAAA
CGACAAACTGCTGATCTCAGTGAGTTTGGCTGTTGTATTTGCTGTTGTAATGATGCTGATCTTTAACCCAGATCAAGTAC
AAGCTGCTGGTAAAACCGCCTTTGCTGCATTAACCAATACATTTGGTTCTTTCATCCAGCTGTTTGCCTTTGCATCTGTG
TGCACCATGTTGTACATCGCAGTAAGCCGTTACGGCACCATTAAGCTGGGCGAAGGCCAACCTGAATACAGCAACATGAG
CTGGTTGTTCATGTTTATCTGTGCCGGTTTAGGTTCAGCCACTATGTACTGGGCGTTCATGGAGTGGGCTTACTACTACA
ACGGTATTGGTCTAAACATTGAAGGACAGAGCAACGAAGCGCTGCGTACTAGCTTGTCTTACGTGATGTTCCACTGGGGT
ATTACGCCTTGGGCTATCTACGGTCTAGCGTCTATCACTATGGCGTACCACTTCCACGTTAACCGTGCTAAAGGTCTTAA
CCTGTCATCGCTAATGGTATCTATCCTTGGCATGAAAGAAGACAGCACTGCTAGCCGTGTTATGGGTCGCTCTTTGGATC
TTATTTTCCTATTCGCGACATTTGGCGGTCTAATCCTAACGACAACAGTTACCGTAAACACAGTTTCTACTGGTTTCGCT
GAACTGTTCGGCATGGAAAATACCTTCGCAATTAAGGCTATCCTGCTAGCACTGATCACCCTAACCTTTACCCTAAGCTC
TTACATCGGTATTGCTGAAGGTCTGCAAAAAATCGCTCATGCCGCTTGTGGTATGTGCTTTGTGTTTGCTGTGTTTGTAC
TAGTATTGGGTGACACAGGCTTTATCGTTGATTTCTTTGTGAACTCTTTGGGTCTGACCCTGAGCAACTTCGTTGAGATG
AGCCTGTTCACTGACGCGACAAATGATGGCACCTTCAACAAAGATTGGACTGTGTTCTACTGGTTATACTGGTTCACCTA
CACGCCAGCGGTAGCGATTTTCGTAACCCGTATCTCTAAGGGTCGTACTATCCGTCAAGTCGTATTGGGTCTTATCGCAG
GTGGCTGTGGTGGTTGTTGGTTCTTCTTCGGCGCCCTAACTGGCTACTCAGTTGACGCAATGGTAGACGGCGTGGTGAAT
GCCCCAGCTCTACTAAACAGCGCTACTGGTGACATCGCAGTGGCCCAGTTAATTGCTAACCTGCCATTCGGTACCATCTT
GTCAGTATTCTACTTCGTACTAATGATGCTGTTCCTAGCTTCTCACTTAGATGCGACTGCGTTCACCGTAGCGGCGGTAA
GTACTAAGAACCTTAAGCAAGGTCAAGATCCGACTCGTGAACTACGCGTGTTCTGGTGTGTGATGCTAAGTCTACTACCG
CTAGCGATGCTGTATATCAATGCATCACTAGATACCTTGAAAACAGCGGTAACCCTAACTGCGGCTCCGTTCGTAGTGGT
ACTGATGCTGTGTATGTACGGCCTAAAGAAATTCCTGTCAAACCACAAGTTTGATGACTGTTCTGAGAAATAA

Upstream 100 bases:

>100_bases
ACTCAGCGCCTACTTCGCTCAAAATCCGCCCGAATAAAATTCCCCGGTGTGGCTTACACTCAACCGTAAGCCGCATTACT
ACTTTTGTAAGGATGTAGTT

Downstream 100 bases:

>100_bases
ATCATGCTAAAAATTACCGATATTGAAGTGATCCACCTGCGCGTACCTGCAATGGATGCCGATTGTGAGTGGGGCGAAGA
CGCCGTTATCGTTAAGGTGC

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 529

Protein sequence:

>530_residues
MTDITTTPVTDETVTQQSPVQNDKVQNDKLLISVSLAVVFAVVMMLIFNPDQVQAAGKTAFAALTNTFGSFIQLFAFASV
CTMLYIAVSRYGTIKLGEGQPEYSNMSWLFMFICAGLGSATMYWAFMEWAYYYNGIGLNIEGQSNEALRTSLSYVMFHWG
ITPWAIYGLASITMAYHFHVNRAKGLNLSSLMVSILGMKEDSTASRVMGRSLDLIFLFATFGGLILTTTVTVNTVSTGFA
ELFGMENTFAIKAILLALITLTFTLSSYIGIAEGLQKIAHAACGMCFVFAVFVLVLGDTGFIVDFFVNSLGLTLSNFVEM
SLFTDATNDGTFNKDWTVFYWLYWFTYTPAVAIFVTRISKGRTIRQVVLGLIAGGCGGCWFFFGALTGYSVDAMVDGVVN
APALLNSATGDIAVAQLIANLPFGTILSVFYFVLMMLFLASHLDATAFTVAAVSTKNLKQGQDPTRELRVFWCVMLSLLP
LAMLYINASLDTLKTAVTLTAAPFVVVLMLCMYGLKKFLSNHKFDDCSEK

Sequences:

>Translated_530_residues
MTDITTTPVTDETVTQQSPVQNDKVQNDKLLISVSLAVVFAVVMMLIFNPDQVQAAGKTAFAALTNTFGSFIQLFAFASV
CTMLYIAVSRYGTIKLGEGQPEYSNMSWLFMFICAGLGSATMYWAFMEWAYYYNGIGLNIEGQSNEALRTSLSYVMFHWG
ITPWAIYGLASITMAYHFHVNRAKGLNLSSLMVSILGMKEDSTASRVMGRSLDLIFLFATFGGLILTTTVTVNTVSTGFA
ELFGMENTFAIKAILLALITLTFTLSSYIGIAEGLQKIAHAACGMCFVFAVFVLVLGDTGFIVDFFVNSLGLTLSNFVEM
SLFTDATNDGTFNKDWTVFYWLYWFTYTPAVAIFVTRISKGRTIRQVVLGLIAGGCGGCWFFFGALTGYSVDAMVDGVVN
APALLNSATGDIAVAQLIANLPFGTILSVFYFVLMMLFLASHLDATAFTVAAVSTKNLKQGQDPTRELRVFWCVMLSLLP
LAMLYINASLDTLKTAVTLTAAPFVVVLMLCMYGLKKFLSNHKFDDCSEK
>Mature_529_residues
TDITTTPVTDETVTQQSPVQNDKVQNDKLLISVSLAVVFAVVMMLIFNPDQVQAAGKTAFAALTNTFGSFIQLFAFASVC
TMLYIAVSRYGTIKLGEGQPEYSNMSWLFMFICAGLGSATMYWAFMEWAYYYNGIGLNIEGQSNEALRTSLSYVMFHWGI
TPWAIYGLASITMAYHFHVNRAKGLNLSSLMVSILGMKEDSTASRVMGRSLDLIFLFATFGGLILTTTVTVNTVSTGFAE
LFGMENTFAIKAILLALITLTFTLSSYIGIAEGLQKIAHAACGMCFVFAVFVLVLGDTGFIVDFFVNSLGLTLSNFVEMS
LFTDATNDGTFNKDWTVFYWLYWFTYTPAVAIFVTRISKGRTIRQVVLGLIAGGCGGCWFFFGALTGYSVDAMVDGVVNA
PALLNSATGDIAVAQLIANLPFGTILSVFYFVLMMLFLASHLDATAFTVAAVSTKNLKQGQDPTRELRVFWCVMLSLLPL
AMLYINASLDTLKTAVTLTAAPFVVVLMLCMYGLKKFLSNHKFDDCSEK

Specific function: Unknown

COG id: COG1292

COG function: function code M; Choline-glycine betaine transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BCCT transporter (TC 2.A.15) family [H]

Homologues:

Organism=Escherichia coli, GI1788102, Length=448, Percent_Identity=47.7678571428571, Blast_Score=463, Evalue=1e-132,
Organism=Escherichia coli, GI1786224, Length=507, Percent_Identity=24.2603550295858, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1786506, Length=515, Percent_Identity=27.7669902912621, Blast_Score=173, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000060
- InterPro:   IPR018093 [H]

Pfam domain/function: PF02028 BCCT [H]

EC number: NA

Molecular weight: Translated: 58015; Mature: 57884

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDITTTPVTDETVTQQSPVQNDKVQNDKLLISVSLAVVFAVVMMLIFNPDQVQAAGKTA
CCCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHCCHHH
FAALTNTFGSFIQLFAFASVCTMLYIAVSRYGTIKLGEGQPEYSNMSWLFMFICAGLGSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCHH
TMYWAFMEWAYYYNGIGLNIEGQSNEALRTSLSYVMFHWGITPWAIYGLASITMAYHFHV
HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEE
NRAKGLNLSSLMVSILGMKEDSTASRVMGRSLDLIFLFATFGGLILTTTVTVNTVSTGFA
CCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCEEEEEEEEEEHHHHHHH
ELFGMENTFAIKAILLALITLTFTLSSYIGIAEGLQKIAHAACGMCFVFAVFVLVLGDTG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FIVDFFVNSLGLTLSNFVEMSLFTDATNDGTFNKDWTVFYWLYWFTYTPAVAIFVTRISK
HHHHHHHHHHCHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GRTIRQVVLGLIAGGCGGCWFFFGALTGYSVDAMVDGVVNAPALLNSATGDIAVAQLIAN
CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHHHH
LPFGTILSVFYFVLMMLFLASHLDATAFTVAAVSTKNLKQGQDPTRELRVFWCVMLSLLP
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LAMLYINASLDTLKTAVTLTAAPFVVVLMLCMYGLKKFLSNHKFDDCSEK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TDITTTPVTDETVTQQSPVQNDKVQNDKLLISVSLAVVFAVVMMLIFNPDQVQAAGKTA
CCCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHCCHHH
FAALTNTFGSFIQLFAFASVCTMLYIAVSRYGTIKLGEGQPEYSNMSWLFMFICAGLGSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCHH
TMYWAFMEWAYYYNGIGLNIEGQSNEALRTSLSYVMFHWGITPWAIYGLASITMAYHFHV
HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEE
NRAKGLNLSSLMVSILGMKEDSTASRVMGRSLDLIFLFATFGGLILTTTVTVNTVSTGFA
CCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCEEEEEEEEEEHHHHHHH
ELFGMENTFAIKAILLALITLTFTLSSYIGIAEGLQKIAHAACGMCFVFAVFVLVLGDTG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FIVDFFVNSLGLTLSNFVEMSLFTDATNDGTFNKDWTVFYWLYWFTYTPAVAIFVTRISK
HHHHHHHHHHCHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GRTIRQVVLGLIAGGCGGCWFFFGALTGYSVDAMVDGVVNAPALLNSATGDIAVAQLIAN
CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHHHH
LPFGTILSVFYFVLMMLFLASHLDATAFTVAAVSTKNLKQGQDPTRELRVFWCVMLSLLP
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LAMLYINASLDTLKTAVTLTAAPFVVVLMLCMYGLKKFLSNHKFDDCSEK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]