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The map label for this gene is bkdR [H]

Identifier: 167622288

GI number: 167622288

Start: 411474

End: 411926

Strand: Reverse

Name: bkdR [H]

Synonym: Shal_0347

Alternate gene names: 167622288

Gene position: 411926-411474 (Counterclockwise)

Preceding gene: 167622289

Following gene: 167622287

Centisome position: 7.88

GC content: 47.24

Gene sequence:

>453_bases
ATGGATGTTAAGGACCGCAATATTCTCGCCATATTACAACGCCAAGGCCGTATCGCGATCTCAGAGCTCGCTGCCAAGTT
AAATATGTCCGATACTCCCTGCCTTCGCCGAGTGAGAAAGCTGGAACAAAGTGGCATAATCCGTGGTTATGCGGCGCAAA
TTGACCCAAAAGATGTGGGGTTCAACGTAGTGGTGTACGCCTTTGTACGCCTCAAAGAAAACTCAGATCAACATGCGATA
CTTTTCGAAGACAGCATGGAAAATCTTGAACAAGTAATGGAGTGCTCAGTGGTCACCGGAGCTCACGATTACCTCCTAAA
AATCGTCGCCAGTGACCTGCTAAGCTATGAAAGCTTCGTGAAAAAGTCGCTTGGGAGTCTAAACTGTATCGCAGGGATCG
AATCGACCGTAGTGTTAAAACAGAACTTCTCACGTAGTACATTGCCGCTGTAG

Upstream 100 bases:

>100_bases
ACCCGTAAATTTTCTCTAATAACTTCCATTTAAGATTGGAATCCCCTATAAAATAGCTAATTGATACTGACTTTCACCAT
AAAAATAAAAAGGTTGTCCC

Downstream 100 bases:

>100_bases
CGGCATTCAAGCCTCAAAAAATAACAGGGTTGAACCAAGCACGCTAACTCAATGTTAGCGAGCGCAATAAGCCACTAGAT
CATTGGCCTACTAAGCTTTA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MDVKDRNILAILQRQGRIAISELAAKLNMSDTPCLRRVRKLEQSGIIRGYAAQIDPKDVGFNVVVYAFVRLKENSDQHAI
LFEDSMENLEQVMECSVVTGAHDYLLKIVASDLLSYESFVKKSLGSLNCIAGIESTVVLKQNFSRSTLPL

Sequences:

>Translated_150_residues
MDVKDRNILAILQRQGRIAISELAAKLNMSDTPCLRRVRKLEQSGIIRGYAAQIDPKDVGFNVVVYAFVRLKENSDQHAI
LFEDSMENLEQVMECSVVTGAHDYLLKIVASDLLSYESFVKKSLGSLNCIAGIESTVVLKQNFSRSTLPL
>Mature_150_residues
MDVKDRNILAILQRQGRIAISELAAKLNMSDTPCLRRVRKLEQSGIIRGYAAQIDPKDVGFNVVVYAFVRLKENSDQHAI
LFEDSMENLEQVMECSVVTGAHDYLLKIVASDLLSYESFVKKSLGSLNCIAGIESTVVLKQNFSRSTLPL

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=141, Percent_Identity=34.7517730496454, Blast_Score=98, Evalue=2e-22,
Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=26, Blast_Score=91, Evalue=3e-20,
Organism=Escherichia coli, GI1790182, Length=149, Percent_Identity=27.5167785234899, Blast_Score=66, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 16734; Mature: 16734

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVKDRNILAILQRQGRIAISELAAKLNMSDTPCLRRVRKLEQSGIIRGYAAQIDPKDVG
CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEHCCCCCCCCCC
FNVVVYAFVRLKENSDQHAILFEDSMENLEQVMECSVVTGAHDYLLKIVASDLLSYESFV
HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
KKSLGSLNCIAGIESTVVLKQNFSRSTLPL
HHHCCCCCHHHCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MDVKDRNILAILQRQGRIAISELAAKLNMSDTPCLRRVRKLEQSGIIRGYAAQIDPKDVG
CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEHCCCCCCCCCC
FNVVVYAFVRLKENSDQHAILFEDSMENLEQVMECSVVTGAHDYLLKIVASDLLSYESFV
HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
KKSLGSLNCIAGIESTVVLKQNFSRSTLPL
HHHCCCCCHHHCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]