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The map label for this gene is 167621969

Identifier: 167621969

GI number: 167621969

Start: 32569

End: 33669

Strand: Direct

Name: 167621969

Synonym: Shal_0028

Alternate gene names: NA

Gene position: 32569-33669 (Clockwise)

Preceding gene: 167621963

Following gene: 167621970

Centisome position: 0.62

GC content: 47.14

Gene sequence:

>1101_bases
ATGGACACCCTGATGAAACGGTTAATATTACTTGCTTCACTTATAGTTGGTTGCACCTCTGTTTTCGCTGATACATTAAC
CCTAAAGTCGGGGCACCCTGATTCTTATGTGGTTGAGAAGGGGGATACGCTTTGGGATATCTCTGCATTTTTCCTCAAAG
ATCCATGGCGTTGGCCTAAGTTGTGGGGAGCAAACCCCCAAGTTGCCAATCCTCACCTTATTTACCCTGGCGACAAATTG
ACTCTGGTGTTTATCGATGGTGAACCTCGTTTAGTCGTTAAGCCCCATGTCAGAAAAAGCCCTCAAGGACGTATCTCTCC
CAAAGATGGTGCTATTCCGGCGATAGACCTCTCTTTAATCCAACCTTACCTATTGCAGAACCGGGTAGTTGAAGCCGATT
GGTTCGAGCTACAACCCAAAGTGATGGGCGGTGAGAGCCCCTCTAAGTTCCATGTGGTTTCAGACATTATTTATGTGCAG
GGTGAGTTAACCGTTGGCGATAAGCTTGGCGTTTATCTCGATGGTCGAACGTTCAAAAATACTGACGGTGAAAACCTAGG
CTTAGAAGTGATTTTATCGGCTTCAGGTCGAGTGGTAGAGTCGGGCTCAATCTCTAAGGTGGAGTTACTCAGTAGCCTGC
AAGAAACCGCGGCCGGTTATCGCGTACTACCAATTGAAGATGACTCGCTGATGTCTGCGTATTTTATGCCGAGAGCGGCT
GAGCTTAAAGAGCCTGCGACAGTATTGGCGTCGGGGAAAGATATTCGCGAAATGGGTAAACTCGATGTGGTTTACTTAGA
CAGGGGCGCTACTGATGGGCTCGAAACAGGGCATGTGTTTTCAATCTTTAAAAATGGCGAAGTTGTGGTGATCGACGGTG
ATGGTGTGCCTGTGCAGCCCCACGATCGTAATCGCTACGAGAAAATGTTGGCCAATATATCTTCTGACAGCGCTGTTAAG
ATGCCAGATCTGTATCGTGGTAAACTGATGGTGTTTAAAGTCTTCGATAAAACTAGCATGGGCATCATCTTAGTTAATGA
GCGTCCTGTGCGGGTGGCTGATAAGTTGGCTATTCCTGATTCGCTGATTAGTAGCGAGTAG

Upstream 100 bases:

>100_bases
GTTAGTTATACTGACTTTGGCTAATGGCTCAATTTTAGTCGTTAGCGGCATTCAATAACAGCAAAAGCTCTATATATACC
CTAATAAAAGAGCAAATAGC

Downstream 100 bases:

>100_bases
GCTAAGGTTAGTTATACTCATTGTATCGATGCCATCTTAATGATGGCATCGTCTTTTAAAGGATAAACCATTAACGATAA
ACTGGTCGATTGGCTAGTTG

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain Protein; Cell Wall Degradation; LysM Motif-Containing Protein; Protein Containing LysM Domain; Signal Peptide Protein; LysM Family Cell Wall Degradation Protein; Lysin Domain-Containing Protein; Signal Peptide Protein LysM Domain Protein; Secreted Protein

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MDTLMKRLILLASLIVGCTSVFADTLTLKSGHPDSYVVEKGDTLWDISAFFLKDPWRWPKLWGANPQVANPHLIYPGDKL
TLVFIDGEPRLVVKPHVRKSPQGRISPKDGAIPAIDLSLIQPYLLQNRVVEADWFELQPKVMGGESPSKFHVVSDIIYVQ
GELTVGDKLGVYLDGRTFKNTDGENLGLEVILSASGRVVESGSISKVELLSSLQETAAGYRVLPIEDDSLMSAYFMPRAA
ELKEPATVLASGKDIREMGKLDVVYLDRGATDGLETGHVFSIFKNGEVVVIDGDGVPVQPHDRNRYEKMLANISSDSAVK
MPDLYRGKLMVFKVFDKTSMGIILVNERPVRVADKLAIPDSLISSE

Sequences:

>Translated_366_residues
MDTLMKRLILLASLIVGCTSVFADTLTLKSGHPDSYVVEKGDTLWDISAFFLKDPWRWPKLWGANPQVANPHLIYPGDKL
TLVFIDGEPRLVVKPHVRKSPQGRISPKDGAIPAIDLSLIQPYLLQNRVVEADWFELQPKVMGGESPSKFHVVSDIIYVQ
GELTVGDKLGVYLDGRTFKNTDGENLGLEVILSASGRVVESGSISKVELLSSLQETAAGYRVLPIEDDSLMSAYFMPRAA
ELKEPATVLASGKDIREMGKLDVVYLDRGATDGLETGHVFSIFKNGEVVVIDGDGVPVQPHDRNRYEKMLANISSDSAVK
MPDLYRGKLMVFKVFDKTSMGIILVNERPVRVADKLAIPDSLISSE
>Mature_366_residues
MDTLMKRLILLASLIVGCTSVFADTLTLKSGHPDSYVVEKGDTLWDISAFFLKDPWRWPKLWGANPQVANPHLIYPGDKL
TLVFIDGEPRLVVKPHVRKSPQGRISPKDGAIPAIDLSLIQPYLLQNRVVEADWFELQPKVMGGESPSKFHVVSDIIYVQ
GELTVGDKLGVYLDGRTFKNTDGENLGLEVILSASGRVVESGSISKVELLSSLQETAAGYRVLPIEDDSLMSAYFMPRAA
ELKEPATVLASGKDIREMGKLDVVYLDRGATDGLETGHVFSIFKNGEVVVIDGDGVPVQPHDRNRYEKMLANISSDSAVK
MPDLYRGKLMVFKVFDKTSMGIILVNERPVRVADKLAIPDSLISSE

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40310; Mature: 40310

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLMKRLILLASLIVGCTSVFADTLTLKSGHPDSYVVEKGDTLWDISAFFLKDPWRWPK
CHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCH
LWGANPQVANPHLIYPGDKLTLVFIDGEPRLVVKPHVRKSPQGRISPKDGAIPAIDLSLI
HCCCCCCCCCCEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHH
QPYLLQNRVVEADWFELQPKVMGGESPSKFHVVSDIIYVQGELTVGDKLGVYLDGRTFKN
HHHHHHCCEECCCCEEECCEEECCCCCCEEEEEEEEEEEEEEEEECCCEEEEECCCEECC
TDGENLGLEVILSASGRVVESGSISKVELLSSLQETAAGYRVLPIEDDSLMSAYFMPRAA
CCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCHH
ELKEPATVLASGKDIREMGKLDVVYLDRGATDGLETGHVFSIFKNGEVVVIDGDGVPVQP
HCCCCCEEEECCCCHHHHCCEEEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCC
HDRNRYEKMLANISSDSAVKMPDLYRGKLMVFKVFDKTSMGIILVNERPVRVADKLAIPD
CCCHHHHHHHHCCCCCCCEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCHHHHHCCCH
SLISSE
HHHCCC
>Mature Secondary Structure
MDTLMKRLILLASLIVGCTSVFADTLTLKSGHPDSYVVEKGDTLWDISAFFLKDPWRWPK
CHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCH
LWGANPQVANPHLIYPGDKLTLVFIDGEPRLVVKPHVRKSPQGRISPKDGAIPAIDLSLI
HCCCCCCCCCCEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHH
QPYLLQNRVVEADWFELQPKVMGGESPSKFHVVSDIIYVQGELTVGDKLGVYLDGRTFKN
HHHHHHCCEECCCCEEECCEEECCCCCCEEEEEEEEEEEEEEEEECCCEEEEECCCEECC
TDGENLGLEVILSASGRVVESGSISKVELLSSLQETAAGYRVLPIEDDSLMSAYFMPRAA
CCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCHH
ELKEPATVLASGKDIREMGKLDVVYLDRGATDGLETGHVFSIFKNGEVVVIDGDGVPVQP
HCCCCCEEEECCCCHHHHCCEEEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCC
HDRNRYEKMLANISSDSAVKMPDLYRGKLMVFKVFDKTSMGIILVNERPVRVADKLAIPD
CCCHHHHHHHHCCCCCCCEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCHHHHHCCCH
SLISSE
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA