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Identifier: 16752385

GI number: 16752385

Start: 103738

End: 104487

Strand: Direct

Name: Not Available

Synonym: CP0092

Alternate gene names: 16752385

Gene position: 103738-104487 (Clockwise)

Preceding gene: 16752383

Following gene: 16752386

Centisome position: 8.43

GC content: 37.2

Gene sequence:

>750_bases
ATGAGTTTATTAAAAGATACGGTTTTTACTTGCCTAGATTGTGAAATGACAGGTCTAGATGTAAAAAAAGATCGTATTAT
TGAAATTGCCGCTGTTCGCTTTACTTTCGATAGTGTAATTAGTTCGATAGAATTTTTAATCAATCCAGAACGCGTTGTAT
CTGCGGAGTCCCAGAGAGTCCACCATATCTCCAACGCTATGTTGAGAGATCAGCCGAAAATCGCCGAAGTTTTTCCTCAA
ATCAAAGCATTTTTTAAAGAAGGCGACTATATCGTAGGACATAGCGTCGGTTTTGATTTGCAGGTTCTCGCTCAAGAGAT
GGAAAGAATCGGAGAGACCTTCCTCTCAAAGTATACCATTATTGATACCCTCCGATTAGCAAAAGAATATGGAGATAGTC
CTAATAATTCTCTAGAATCCTTAGCCGTACACTTTAATGTTCCCTATGATGGGAATCATCGTGCCATGAAGGATGTAGAA
ATTAATATCAATATTTTTAAACATCTTTGTAAACGTTTCCGAACGTTAGAACAACTGAAACAGGTGTTAGCAAAACCTAT
TAAAATGAAATATATGCCCCTAGGGAAACACAAGGGACGATGTTTTTCAGAAATTCCTCTTGCCTATCTTCAATGGGCAT
CAAAAATGGATTTCGATTCAGACCTTCTTTTTTCTATCCGTCATGAAATCAAGCATAGACAAAAGGGGACCGGATTTTCA
CAAGTTAACAATCCCTTTATGGAATTGTAA

Upstream 100 bases:

>100_bases
AAGGCATTCTCTGCACAGATGCAAAATATAAAGTTAAACACAGAAATCCTTCTACAGTCAGAAGGATATCAAACAAAGAT
AGAGGAAGTAGAAGGAAATT

Downstream 100 bases:

>100_bases
GCACTTCGATTTCTAAAAAATAATCAAAAATTTCAGTAACTTATGAAAGAAAATCATAGATTTTCTTTCAGTTGACCGAT
ACTATCGCAACCAAGAATAC

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: PolIII [H]

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVISSIEFLINPERVVSAESQRVHHISNAMLRDQPKIAEVFPQ
IKAFFKEGDYIVGHSVGFDLQVLAQEMERIGETFLSKYTIIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGNHRAMKDVE
ININIFKHLCKRFRTLEQLKQVLAKPIKMKYMPLGKHKGRCFSEIPLAYLQWASKMDFDSDLLFSIRHEIKHRQKGTGFS
QVNNPFMEL

Sequences:

>Translated_249_residues
MSLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVISSIEFLINPERVVSAESQRVHHISNAMLRDQPKIAEVFPQ
IKAFFKEGDYIVGHSVGFDLQVLAQEMERIGETFLSKYTIIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGNHRAMKDVE
ININIFKHLCKRFRTLEQLKQVLAKPIKMKYMPLGKHKGRCFSEIPLAYLQWASKMDFDSDLLFSIRHEIKHRQKGTGFS
QVNNPFMEL
>Mature_248_residues
SLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVISSIEFLINPERVVSAESQRVHHISNAMLRDQPKIAEVFPQI
KAFFKEGDYIVGHSVGFDLQVLAQEMERIGETFLSKYTIIDTLRLAKEYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEI
NINIFKHLCKRFRTLEQLKQVLAKPIKMKYMPLGKHKGRCFSEIPLAYLQWASKMDFDSDLLFSIRHEIKHRQKGTGFSQ
VNNPFMEL

Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI1788149, Length=234, Percent_Identity=25.6410256410256, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011708
- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR023223
- InterPro:   IPR016027
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR006308
- InterPro:   IPR012337 [H]

Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 28719; Mature: 28587

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVISSIEFLINPERVVSAESQRV
CCHHHHHHHHHHCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HHISNAMLRDQPKIAEVFPQIKAFFKEGDYIVGHSVGFDLQVLAQEMERIGETFLSKYTI
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IDTLRLAKEYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEININIFKHLCKRFRTLEQLK
HHHHHHHHHHCCCCCCCHHEEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHH
QVLAKPIKMKYMPLGKHKGRCFSEIPLAYLQWASKMDFDSDLLFSIRHEIKHRQKGTGFS
HHHHCHHHEEEEECCCCCCCCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH
QVNNPFMEL
HHCCCHHCC
>Mature Secondary Structure 
SLLKDTVFTCLDCEMTGLDVKKDRIIEIAAVRFTFDSVISSIEFLINPERVVSAESQRV
CHHHHHHHHHHCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HHISNAMLRDQPKIAEVFPQIKAFFKEGDYIVGHSVGFDLQVLAQEMERIGETFLSKYTI
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IDTLRLAKEYGDSPNNSLESLAVHFNVPYDGNHRAMKDVEININIFKHLCKRFRTLEQLK
HHHHHHHHHHCCCCCCCHHEEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHH
QVLAKPIKMKYMPLGKHKGRCFSEIPLAYLQWASKMDFDSDLLFSIRHEIKHRQKGTGFS
HHHHCHHHEEEEECCCCCCCCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH
QVNNPFMEL
HHCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]