Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 167041020

GI number: 167041020

Start: 2454956

End: 2455576

Strand: Reverse

Name: jag [H]

Synonym: Teth514_2410

Alternate gene names: 167041020

Gene position: 2455576-2454956 (Counterclockwise)

Preceding gene: 167041021

Following gene: 167041019

Centisome position: 99.93

GC content: 35.27

Gene sequence:

>621_bases
TTGAAAGAGCTTATAAGGACAGGCAAGACGGTGGAAGAAGCTGTAAATCTTGCCTTACAGGAATTTGGCGTACCGAGGGA
AATGGTACAAGTGGAAGTGTTGGATGAAGGGGGTAAAGGTTTTCTAGGTCTTATAAGCAAGCAGGCGATAGTCAAAGTAA
TTTTAAAAGATGTAATAAAGGAGAGCGCTAAAAATTTTTTACAGCAAGTAATTGAGGCGATGAAATTAGATGTTAAGTTT
GATATAGAAGAAGATGAGGATACTATAAAGTTTAATTTATATGGAAAAAATGTGGGGTTGTTGATAGGTCATAGGGGTGA
GACATTAGATTCATTGCAATATCTTGTAAATGTTGTTGCCAGCAAGTATAGAGAATATGATAGATATAGAAGAATTATAT
TAGATGCAGAAAATTATAGAAAAAGAAGGGAAGAGACTCTAATTAGGCTTGCGAAAAAATTAGCCAAACAAGTAATGGAG
ACAAAAGAAAGCGTTGAATTAGAGCCTATGAGTCCTAATGAAAGGCGAATAATTCACATGGCTTTGCAGGACCATCCATA
TGTAGAGACTTATAGTGAAGGAGAGGAGCCTAATAGAAGAGTCATAATAGCTTTAAAATAA

Upstream 100 bases:

>100_bases
GCAGGAGTAGGAATATATTGGGTTACAAGCAATATATTTCAGATAGTGCAGCAGTATATTTTTATGAGAGAGACAAATAC
TGCTAAGGGGGAATCATAAG

Downstream 100 bases:

>100_bases
TACCCTGTCAAGGGTTTTTTTTATATTTCTGATTGAAAAAGTGAAAACATTGGTATATTATTTTATAAGACAATTTTTTG
GTTGGTGATGAAAATGGTTT

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKELIRTGKTVEEAVNLALQEFGVPREMVQVEVLDEGGKGFLGLISKQAIVKVILKDVIKESAKNFLQQVIEAMKLDVKF
DIEEDEDTIKFNLYGKNVGLLIGHRGETLDSLQYLVNVVASKYREYDRYRRIILDAENYRKRREETLIRLAKKLAKQVME
TKESVELEPMSPNERRIIHMALQDHPYVETYSEGEEPNRRVIIALK

Sequences:

>Translated_206_residues
MKELIRTGKTVEEAVNLALQEFGVPREMVQVEVLDEGGKGFLGLISKQAIVKVILKDVIKESAKNFLQQVIEAMKLDVKF
DIEEDEDTIKFNLYGKNVGLLIGHRGETLDSLQYLVNVVASKYREYDRYRRIILDAENYRKRREETLIRLAKKLAKQVME
TKESVELEPMSPNERRIIHMALQDHPYVETYSEGEEPNRRVIIALK
>Mature_206_residues
MKELIRTGKTVEEAVNLALQEFGVPREMVQVEVLDEGGKGFLGLISKQAIVKVILKDVIKESAKNFLQQVIEAMKLDVKF
DIEEDEDTIKFNLYGKNVGLLIGHRGETLDSLQYLVNVVASKYREYDRYRRIILDAENYRKRREETLIRLAKKLAKQVME
TKESVELEPMSPNERRIIHMALQDHPYVETYSEGEEPNRRVIIALK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23878; Mature: 23878

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELIRTGKTVEEAVNLALQEFGVPREMVQVEVLDEGGKGFLGLISKQAIVKVILKDVIK
CCHHHHCCCHHHHHHHHHHHHHCCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESAKNFLQQVIEAMKLDVKFDIEEDEDTIKFNLYGKNVGLLIGHRGETLDSLQYLVNVVA
HHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHH
SKYREYDRYRRIILDAENYRKRREETLIRLAKKLAKQVMETKESVELEPMSPNERRIIHM
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEE
ALQDHPYVETYSEGEEPNRRVIIALK
EECCCCCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MKELIRTGKTVEEAVNLALQEFGVPREMVQVEVLDEGGKGFLGLISKQAIVKVILKDVIK
CCHHHHCCCHHHHHHHHHHHHHCCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESAKNFLQQVIEAMKLDVKFDIEEDEDTIKFNLYGKNVGLLIGHRGETLDSLQYLVNVVA
HHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHHHH
SKYREYDRYRRIILDAENYRKRREETLIRLAKKLAKQVMETKESVELEPMSPNERRIIHM
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEE
ALQDHPYVETYSEGEEPNRRVIIALK
EECCCCCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]