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The map label for this gene is yddS [C]

Identifier: 167040432

GI number: 167040432

Start: 1805818

End: 1807668

Strand: Reverse

Name: yddS [C]

Synonym: Teth514_1796

Alternate gene names: 167040432

Gene position: 1807668-1805818 (Counterclockwise)

Preceding gene: 167040435

Following gene: 167040431

Centisome position: 73.56

GC content: 37.44

Gene sequence:

>1851_bases
ATGAGTAAAAAAATTAAAAAATTTATTGCACTGCTTGTAATTGTTTTCTTTACAGCAGGTATTTTTGTGGGGTGTGGGCA
GTCAAATTCTACTCAACAGGAATCCCAAGAAGCAAAACAACAAGAAGAGGTAAAGAAGACAAGAGAACTTAGACTTGCGA
CGGATTGGCCCTATCCTTTCCACGGTAACCCATTTGGCCCAGGAGGTATAGGAGGAGCATGGTGGTTTGCTTATGAGCCT
TTTGCCTATTATATTCCTCAAACAGGGGAATACATTCCGCGCTTAGCTGAAAGTTGGAAAGTAGAAGGAAATAAGGTTAC
AGTAAATCTTAGGAAAGATGCAAAGTTCAGCGATGGCGAACCTTTTACCTCAAAAGATGTGATAAATACGGTGAATTTAA
TACAGGCTATGTGGCAATGGCCTTATGACATTGAATCTGTAGAGGCTCCAGATGACAATACAGTTATTTTTACCCTTTCA
AAGACAGCTTCCTCTTCTTTTGTACACACACTGCTTACAGATGGAGCTATGGCATCCTTAGCGCCTGTACATGTATATGG
GGATTTTGCTAAATCTGCTCAGGAAGTGGCTGATTTAGGGAAAAAGATATTTTACTTACAAACAGAAGGCAAAACTGTGC
CAGAGGATATGAAAGCAGAGTATGATAAAAAATCAGACGAATTAAGAAAACAAGTGAATGATTTTTCACCCTTTAAGACA
TTAGGAAAGCTACCGGTAGTTGGTGCTTTTGAACCTGTTAAAGTAACTCAATCAGAAATGGTATTGGAGGCAAATAAATA
CTATTGGGCTTATCCGCAAATGAAAATTGACAAAGTTGTGTTTAAGAAATGGTCTTCAAATGAATTTGTATGGGCTTCAC
TTATATCTAATGAAATTGATGCAGCTCATCCTTCTATGCCAAAAGATGTAGTAGAACAACTTTCAACATTGAATCCAAAA
TTAAATGTGCTTACTGTTTCTGACTTGTCCGACATAGCATTAGTATTTAATTTTAAGAAACCGCTCTTTCAAGATCTGAA
CTTAAGAAAAGCTATTGCTCATATATTAGATAGAGATAAAATTAGGGATGTCTCTGTATGGCAAGCAAATAGTTATGAAA
ATTACGCTGACGGTGTATTAAAGAGTATGGAAGCAAAATGGGTAACTCAAGATACATTGCAAAAACTTACAAAATATAAC
ACGGATGTGGCAGCAGCAGAGGAGATTTTAAAGAATGCAGGCTACAAAAAAGTAGGAGATACCTGGCAACAACCTAACGG
ACAACCAGTGGCTTTCACTTTATCTGTATACGGACCTCATAACGATTGGGTATTGGCTGCAAAGGAAGTAGTTCAACAAT
TGAACAATTTTGGATTTAAAGTTGAAATGAAATTGATTCCTGAAGGTATGAGAGACCAAGTAATGAGAAGTGGAGATTAC
GATGTAGCTATTGAATTTGGTTCTGCATGGTGGGGTTATCCTCATCCTTTGACTGGGTATCAGAGGTTGTATGATGGAGA
CGTTTCTGCTATTACTAATTTCCCTGCAAAAGACAAATATCAAACTCCATGGGGAGAACTTTCCCCCTATGATTTGACAC
TTGAATTGCAGAAGAACCTGCAGGATGAGAACAAGGCAATGGAAATAATTCAGCAATTAGCCTATATTACTAATGAGTAT
TTGCCTGTGATACCGCTATATGAGAAAGTACTGCCCATTTATTACAATGATGGTTATAGAGTTAAAGGATGGCCTGCAGA
AGATGATGCTATATGGTCTTTAGCACCAGGTGGAATTGAAAGGGTATACGATTTATTGATTACTACAGGTAAATTAGTTC
CAGCAAAATAA

Upstream 100 bases:

>100_bases
TAAGCTAATAGAAAGAGAGTCCGTTAAAGAGATTTATTAACCACGTTTCCAAATAATTTTTAAATATATTTTTAAGTAAA
AAAGAGGGGAGAGGTTAAAA

Downstream 100 bases:

>100_bases
TAGGCGGGGGTAAAGATGAATTATTTTATAAATAAAACCTTGTATTTATTAATAGTGTTTGTAATTGCCATAAGTGGGGT
ATTTGTACTGGTAAACAATA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: ABC Transporter Periplasmic Component; Dipeptide ABC Transporter Periplasmic Protein; ABC-Type Dipeptide Transport System; Abc-Type Dipeptide Transport System Periplasmic Component

Number of amino acids: Translated: 616; Mature: 615

Protein sequence:

>616_residues
MSKKIKKFIALLVIVFFTAGIFVGCGQSNSTQQESQEAKQQEEVKKTRELRLATDWPYPFHGNPFGPGGIGGAWWFAYEP
FAYYIPQTGEYIPRLAESWKVEGNKVTVNLRKDAKFSDGEPFTSKDVINTVNLIQAMWQWPYDIESVEAPDDNTVIFTLS
KTASSSFVHTLLTDGAMASLAPVHVYGDFAKSAQEVADLGKKIFYLQTEGKTVPEDMKAEYDKKSDELRKQVNDFSPFKT
LGKLPVVGAFEPVKVTQSEMVLEANKYYWAYPQMKIDKVVFKKWSSNEFVWASLISNEIDAAHPSMPKDVVEQLSTLNPK
LNVLTVSDLSDIALVFNFKKPLFQDLNLRKAIAHILDRDKIRDVSVWQANSYENYADGVLKSMEAKWVTQDTLQKLTKYN
TDVAAAEEILKNAGYKKVGDTWQQPNGQPVAFTLSVYGPHNDWVLAAKEVVQQLNNFGFKVEMKLIPEGMRDQVMRSGDY
DVAIEFGSAWWGYPHPLTGYQRLYDGDVSAITNFPAKDKYQTPWGELSPYDLTLELQKNLQDENKAMEIIQQLAYITNEY
LPVIPLYEKVLPIYYNDGYRVKGWPAEDDAIWSLAPGGIERVYDLLITTGKLVPAK

Sequences:

>Translated_616_residues
MSKKIKKFIALLVIVFFTAGIFVGCGQSNSTQQESQEAKQQEEVKKTRELRLATDWPYPFHGNPFGPGGIGGAWWFAYEP
FAYYIPQTGEYIPRLAESWKVEGNKVTVNLRKDAKFSDGEPFTSKDVINTVNLIQAMWQWPYDIESVEAPDDNTVIFTLS
KTASSSFVHTLLTDGAMASLAPVHVYGDFAKSAQEVADLGKKIFYLQTEGKTVPEDMKAEYDKKSDELRKQVNDFSPFKT
LGKLPVVGAFEPVKVTQSEMVLEANKYYWAYPQMKIDKVVFKKWSSNEFVWASLISNEIDAAHPSMPKDVVEQLSTLNPK
LNVLTVSDLSDIALVFNFKKPLFQDLNLRKAIAHILDRDKIRDVSVWQANSYENYADGVLKSMEAKWVTQDTLQKLTKYN
TDVAAAEEILKNAGYKKVGDTWQQPNGQPVAFTLSVYGPHNDWVLAAKEVVQQLNNFGFKVEMKLIPEGMRDQVMRSGDY
DVAIEFGSAWWGYPHPLTGYQRLYDGDVSAITNFPAKDKYQTPWGELSPYDLTLELQKNLQDENKAMEIIQQLAYITNEY
LPVIPLYEKVLPIYYNDGYRVKGWPAEDDAIWSLAPGGIERVYDLLITTGKLVPAK
>Mature_615_residues
SKKIKKFIALLVIVFFTAGIFVGCGQSNSTQQESQEAKQQEEVKKTRELRLATDWPYPFHGNPFGPGGIGGAWWFAYEPF
AYYIPQTGEYIPRLAESWKVEGNKVTVNLRKDAKFSDGEPFTSKDVINTVNLIQAMWQWPYDIESVEAPDDNTVIFTLSK
TASSSFVHTLLTDGAMASLAPVHVYGDFAKSAQEVADLGKKIFYLQTEGKTVPEDMKAEYDKKSDELRKQVNDFSPFKTL
GKLPVVGAFEPVKVTQSEMVLEANKYYWAYPQMKIDKVVFKKWSSNEFVWASLISNEIDAAHPSMPKDVVEQLSTLNPKL
NVLTVSDLSDIALVFNFKKPLFQDLNLRKAIAHILDRDKIRDVSVWQANSYENYADGVLKSMEAKWVTQDTLQKLTKYNT
DVAAAEEILKNAGYKKVGDTWQQPNGQPVAFTLSVYGPHNDWVLAAKEVVQQLNNFGFKVEMKLIPEGMRDQVMRSGDYD
VAIEFGSAWWGYPHPLTGYQRLYDGDVSAITNFPAKDKYQTPWGELSPYDLTLELQKNLQDENKAMEIIQQLAYITNEYL
PVIPLYEKVLPIYYNDGYRVKGWPAEDDAIWSLAPGGIERVYDLLITTGKLVPAK

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yddopqrs. [C]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69803; Mature: 69672

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKIKKFIALLVIVFFTAGIFVGCGQSNSTQQESQEAKQQEEVKKTRELRLATDWPYPF
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCC
HGNPFGPGGIGGAWWFAYEPFAYYIPQTGEYIPRLAESWKVEGNKVTVNLRKDAKFSDGE
CCCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
PFTSKDVINTVNLIQAMWQWPYDIESVEAPDDNTVIFTLSKTASSSFVHTLLTDGAMASL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHC
APVHVYGDFAKSAQEVADLGKKIFYLQTEGKTVPEDMKAEYDKKSDELRKQVNDFSPFKT
CEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHH
LGKLPVVGAFEPVKVTQSEMVLEANKYYWAYPQMKIDKVVFKKWSSNEFVWASLISNEID
HCCCCCCCCCCCCEECHHHHEEEECCEEEECCCCHHHHHHHHHCCCCCEEEHHHHHCHHC
AAHPSMPKDVVEQLSTLNPKLNVLTVSDLSDIALVFNFKKPLFQDLNLRKAIAHILDRDK
CCCCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHC
IRDVSVWQANSYENYADGVLKSMEAKWVTQDTLQKLTKYNTDVAAAEEILKNAGYKKVGD
CCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
TWQQPNGQPVAFTLSVYGPHNDWVLAAKEVVQQLNNFGFKVEMKLIPEGMRDQVMRSGDY
CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCC
DVAIEFGSAWWGYPHPLTGYQRLYDGDVSAITNFPAKDKYQTPWGELSPYDLTLELQKNL
EEEEEECCCCCCCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHCC
QDENKAMEIIQQLAYITNEYLPVIPLYEKVLPIYYNDGYRVKGWPAEDDAIWSLAPGGIE
CCHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCCEEECCCCCCCCCEEEECCCHHH
RVYDLLITTGKLVPAK
HHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKKIKKFIALLVIVFFTAGIFVGCGQSNSTQQESQEAKQQEEVKKTRELRLATDWPYPF
CHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCC
HGNPFGPGGIGGAWWFAYEPFAYYIPQTGEYIPRLAESWKVEGNKVTVNLRKDAKFSDGE
CCCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
PFTSKDVINTVNLIQAMWQWPYDIESVEAPDDNTVIFTLSKTASSSFVHTLLTDGAMASL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHC
APVHVYGDFAKSAQEVADLGKKIFYLQTEGKTVPEDMKAEYDKKSDELRKQVNDFSPFKT
CEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHH
LGKLPVVGAFEPVKVTQSEMVLEANKYYWAYPQMKIDKVVFKKWSSNEFVWASLISNEID
HCCCCCCCCCCCCEECHHHHEEEECCEEEECCCCHHHHHHHHHCCCCCEEEHHHHHCHHC
AAHPSMPKDVVEQLSTLNPKLNVLTVSDLSDIALVFNFKKPLFQDLNLRKAIAHILDRDK
CCCCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHC
IRDVSVWQANSYENYADGVLKSMEAKWVTQDTLQKLTKYNTDVAAAEEILKNAGYKKVGD
CCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
TWQQPNGQPVAFTLSVYGPHNDWVLAAKEVVQQLNNFGFKVEMKLIPEGMRDQVMRSGDY
CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCC
DVAIEFGSAWWGYPHPLTGYQRLYDGDVSAITNFPAKDKYQTPWGELSPYDLTLELQKNL
EEEEEECCCCCCCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHCC
QDENKAMEIIQQLAYITNEYLPVIPLYEKVLPIYYNDGYRVKGWPAEDDAIWSLAPGGIE
CCHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCCEEECCCCCCCCCEEEECCCHHH
RVYDLLITTGKLVPAK
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA