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The map label for this gene is yliC [C]

Identifier: 167040431

GI number: 167040431

Start: 1804816

End: 1805802

Strand: Reverse

Name: yliC [C]

Synonym: Teth514_1795

Alternate gene names: 167040431

Gene position: 1805802-1804816 (Counterclockwise)

Preceding gene: 167040432

Following gene: 167040430

Centisome position: 73.49

GC content: 34.55

Gene sequence:

>987_bases
ATGAATTATTTTATAAATAAAACCTTGTATTTATTAATAGTGTTTGTAATTGCCATAAGTGGGGTATTTGTACTGGTAAA
CAATATGCCAGGGGACCCCGCTTATGGCCTGGCTGTTTCTATTGCTCAACAGAGGAATATGCAGATAGAGCAAGCTTTAG
AAATATCCCATAAGATGATGGGGATAGACCCTCATGAATCGATATTTATAAGATATGGAAAATTTGTGTCAAATCTATTA
AAAGGCAACTTTGGGTATTCTGCTTTTTATAACACAAGTGTAAATGAAATAATTGCAGAATCGCTACCATGGACTCTTTT
TGTAATTTCTTTAGCTACTTTTTTGAGTTTTACAATAGGAATATTTTTAGGAGCTTTTGCAGCACAAAAAAGAGCTACAA
TTACAGAAGGAATTATTTCTACAGTTTCGAGTATAATACAAGCCATACCTCCTTTTATACTAGCGGTTTTAATTTTGTTT
GTATTTTCAGTTAGATTAAAAGTATTGCCGCTAGGAGGCGCTTATCCTGTTGATATAGAGCCTTCTTTCTCCCTTGAGTT
TATTTCGAAAATATTTTTACATGCTTTAGGCCCAATGCTTGCAATTGCAATACCTCAAATGGCTTCTTGGACTTTAGCTA
TGAGAGGTAACACTTCCCAAATAATGGAGGAGGATTTTATAAGGTTTGCAGAGGCAAGAGGCTTAAGAGATTCTGTAATT
GCAGCAAAATATGTGAGAAATAATGCGATGTTGCCTTTAGTGGCAAGTTTAGCGATTAGTGTGGGATATATGTTAGGAGG
CCAGACGTTGGTGGAATCTATTTTTAATTACCCGGGGATAGGATTTTATTTTGGCAAGGCTATAGCTGTTAGAGATTTTG
GATTATTGACTGGATTGTTTACTCTAATTGTAATAGGAGTAATATTAGCAACTTTTATTGCAGATTTTGTTTATGCATTA
ATTGATCCGAGGGTGAAATTGAAATGA

Upstream 100 bases:

>100_bases
TGCTATATGGTCTTTAGCACCAGGTGGAATTGAAAGGGTATACGATTTATTGATTACTACAGGTAAATTAGTTCCAGCAA
AATAATAGGCGGGGGTAAAG

Downstream 100 bases:

>100_bases
AAAAAGAAAATATTGCAAACTTTTATTATGATTACATTCAGCCTTTATTAACAAATAAAAAATCTTTAATTGGGTTAATG
ATATTGCTATTTTATATATT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MNYFINKTLYLLIVFVIAISGVFVLVNNMPGDPAYGLAVSIAQQRNMQIEQALEISHKMMGIDPHESIFIRYGKFVSNLL
KGNFGYSAFYNTSVNEIIAESLPWTLFVISLATFLSFTIGIFLGAFAAQKRATITEGIISTVSSIIQAIPPFILAVLILF
VFSVRLKVLPLGGAYPVDIEPSFSLEFISKIFLHALGPMLAIAIPQMASWTLAMRGNTSQIMEEDFIRFAEARGLRDSVI
AAKYVRNNAMLPLVASLAISVGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLFTLIVIGVILATFIADFVYAL
IDPRVKLK

Sequences:

>Translated_328_residues
MNYFINKTLYLLIVFVIAISGVFVLVNNMPGDPAYGLAVSIAQQRNMQIEQALEISHKMMGIDPHESIFIRYGKFVSNLL
KGNFGYSAFYNTSVNEIIAESLPWTLFVISLATFLSFTIGIFLGAFAAQKRATITEGIISTVSSIIQAIPPFILAVLILF
VFSVRLKVLPLGGAYPVDIEPSFSLEFISKIFLHALGPMLAIAIPQMASWTLAMRGNTSQIMEEDFIRFAEARGLRDSVI
AAKYVRNNAMLPLVASLAISVGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLFTLIVIGVILATFIADFVYAL
IDPRVKLK
>Mature_328_residues
MNYFINKTLYLLIVFVIAISGVFVLVNNMPGDPAYGLAVSIAQQRNMQIEQALEISHKMMGIDPHESIFIRYGKFVSNLL
KGNFGYSAFYNTSVNEIIAESLPWTLFVISLATFLSFTIGIFLGAFAAQKRATITEGIISTVSSIIQAIPPFILAVLILF
VFSVRLKVLPLGGAYPVDIEPSFSLEFISKIFLHALGPMLAIAIPQMASWTLAMRGNTSQIMEEDFIRFAEARGLRDSVI
AAKYVRNNAMLPLVASLAISVGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLFTLIVIGVILATFIADFVYAL
IDPRVKLK

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=328, Percent_Identity=27.1341463414634, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787497, Length=327, Percent_Identity=27.217125382263, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1789888, Length=330, Percent_Identity=26.3636363636364, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1789965, Length=346, Percent_Identity=25.7225433526012, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=26.7477203647416, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788504, Length=317, Percent_Identity=26.4984227129338, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=24.3445692883895, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36025; Mature: 36025

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYFINKTLYLLIVFVIAISGVFVLVNNMPGDPAYGLAVSIAQQRNMQIEQALEISHKMM
CCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHC
GIDPHESIFIRYGKFVSNLLKGNFGYSAFYNTSVNEIIAESLPWTLFVISLATFLSFTIG
CCCCCHHHHHHHHHHHHHHHCCCCCCHHEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
IFLGAFAAQKRATITEGIISTVSSIIQAIPPFILAVLILFVFSVRLKVLPLGGAYPVDIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
PSFSLEFISKIFLHALGPMLAIAIPQMASWTLAMRGNTSQIMEEDFIRFAEARGLRDSVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCHHHHH
AAKYVRNNAMLPLVASLAISVGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLF
HHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
TLIVIGVILATFIADFVYALIDPRVKLK
HHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNYFINKTLYLLIVFVIAISGVFVLVNNMPGDPAYGLAVSIAQQRNMQIEQALEISHKMM
CCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHC
GIDPHESIFIRYGKFVSNLLKGNFGYSAFYNTSVNEIIAESLPWTLFVISLATFLSFTIG
CCCCCHHHHHHHHHHHHHHHCCCCCCHHEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
IFLGAFAAQKRATITEGIISTVSSIIQAIPPFILAVLILFVFSVRLKVLPLGGAYPVDIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
PSFSLEFISKIFLHALGPMLAIAIPQMASWTLAMRGNTSQIMEEDFIRFAEARGLRDSVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCHHHHH
AAKYVRNNAMLPLVASLAISVGYMLGGQTLVESIFNYPGIGFYFGKAIAVRDFGLLTGLF
HHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
TLIVIGVILATFIADFVYALIDPRVKLK
HHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]