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The map label for this gene is rsmB [H]

Identifier: 167040389

GI number: 167040389

Start: 1755781

End: 1757115

Strand: Reverse

Name: rsmB [H]

Synonym: Teth514_1752

Alternate gene names: 167040389

Gene position: 1757115-1755781 (Counterclockwise)

Preceding gene: 167040390

Following gene: 167040388

Centisome position: 71.51

GC content: 29.59

Gene sequence:

>1335_bases
ATGAAACCAAGAGAAATAGCTTATAAAATACTTCAAGAAGTGTTGTCAAAAGAAGCTTATGCGAATATTTCCTTTAATAA
GCATTTAAAAGGACAAGAATTAAAAGAAATAGATAGAGGTTTTACTAAAGAGTTGGTATTTGGTGTTATTGAAAGAAAGT
ACACATTAGATTTTATACTTTCTTTTTTTGTAAATAAGGCTCCGGATTTAAAAACCATGATTTTTCTTGAAATGGGATTA
TACCAGCTTTTGTACATGGACAAAGTTCCTTCTTATGCTGCTATAAATGAGACAGTTAATATAGCTAAAAAAGTATTAGG
GATAAAGAGAGCAAATTTTATAAATGCAGTTTTAAGAAACTACGATAGAGAGAAAGAAAGAGTAATTTTCCCTGATAAAG
AGAGGGATTTAAAGCAATATTTGAAGGTAACATATTCTTATCCTGATTGGATTGTGGAAAGATTACTAAATAATTACGAT
GAAGAGAAGGCAGAGGCGCTTTTAAAAAGTTTAAATGAAAGGCCTGAAATTTGCTACAGGGTTAATACTCTAAAAATTGA
TATTGAAGATTTGAAAAGGCTATTAGATTCTGACGGTATAGCTTATAAAAAAGGCTATTATCTAGAAGAAGCATTGTATA
TAGATATTAAAAACCCTGAAAGTCATCAATTGTACAAAGAAGGTTTTATTTACATTCAGGATGAAGCTTCTATGTTGGTT
TCTAAAATTTTAAATCCCAAAGAAGGAGAAACAGTAATAGATGTGTGTGCTGCTCCTGGTGGTAAAACAACTCATATAGC
ACAATTGATGAAAAATAACGGCAAAGTTGTAGCTTTTGATTTGCACCCTCATAGATTGGAATTGATAAAAGAAAATTGTA
AAAGATTAGGAATTACAAATGTAAAAACTGAGGCCTTTGATTCTACTTTTGTCAATAAAAAATATCTGGAAAAGGCTGAT
AAAGTCTTAGCAGATGTTCCTTGTACAGGTATCGGTATAATCAGGAAAAAACCCGATATTAAGTTAAAGAATTATACGAG
AAAAGAAATTTCAGAATTAATTGAAACTCAATATAAAATATTAGATTCCAGTTCAAAATATGTAAAAAAAGGTGGATTTT
TAGTGTATAGTACCTGCACCATAGGAAAGGAAGAAAATCAAAATGTAATAATGAAATTTTTAAAAGAACACCCTGATTTT
AAATTGGTTGATATAAAAGCTGAGATGCCAAGTGGATTAAACATTGAAACTGCTTCTTTAGGATATGTACAAACTACACC
TTTAGAACATGAAATTGATGGCTTTTTTATAAGCAAGTTAAGAAGGATAAAATAG

Upstream 100 bases:

>100_bases
TGCTTTGACTTATGTAGCTGCAGCATTAGTTTCTATTATGCAACTTTTGAGATTGATTATTATAAGAAATAGCAGAGAGT
AAAGGAGAAAAATACGATAA

Downstream 100 bases:

>100_bases
GGGAGTTAGTCTGTGCTAAATGTCAGCTAAATAAGTTACCTACTGATTCTTGACAGGGACAAATCTTAATCTTAAATGAA
CACGGAGGTAATTTGAGTTG

Product: sun protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MKPREIAYKILQEVLSKEAYANISFNKHLKGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVNKAPDLKTMIFLEMGL
YQLLYMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYD
EEKAEALLKSLNERPEICYRVNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIDIKNPESHQLYKEGFIYIQDEASMLV
SKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITNVKTEAFDSTFVNKKYLEKAD
KVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHPDF
KLVDIKAEMPSGLNIETASLGYVQTTPLEHEIDGFFISKLRRIK

Sequences:

>Translated_444_residues
MKPREIAYKILQEVLSKEAYANISFNKHLKGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVNKAPDLKTMIFLEMGL
YQLLYMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYD
EEKAEALLKSLNERPEICYRVNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIDIKNPESHQLYKEGFIYIQDEASMLV
SKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITNVKTEAFDSTFVNKKYLEKAD
KVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHPDF
KLVDIKAEMPSGLNIETASLGYVQTTPLEHEIDGFFISKLRRIK
>Mature_444_residues
MKPREIAYKILQEVLSKEAYANISFNKHLKGQELKEIDRGFTKELVFGVIERKYTLDFILSFFVNKAPDLKTMIFLEMGL
YQLLYMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRNYDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYD
EEKAEALLKSLNERPEICYRVNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIDIKNPESHQLYKEGFIYIQDEASMLV
SKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITNVKTEAFDSTFVNKKYLEKAD
KVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHPDF
KLVDIKAEMPSGLNIETASLGYVQTTPLEHEIDGFFISKLRRIK

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=361, Percent_Identity=32.409972299169, Blast_Score=148, Evalue=9e-36,
Organism=Homo sapiens, GI76150623, Length=361, Percent_Identity=32.409972299169, Blast_Score=148, Evalue=9e-36,
Organism=Homo sapiens, GI32698918, Length=186, Percent_Identity=36.0215053763441, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI8922322, Length=291, Percent_Identity=28.8659793814433, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI23199998, Length=291, Percent_Identity=28.8659793814433, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI270288818, Length=291, Percent_Identity=28.8659793814433, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI270288816, Length=291, Percent_Identity=28.8659793814433, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI39995082, Length=200, Percent_Identity=29.5, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI301336155, Length=200, Percent_Identity=29.5, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI11545785, Length=192, Percent_Identity=31.25, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI40316918, Length=170, Percent_Identity=30.5882352941176, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI2367212, Length=419, Percent_Identity=32.4582338902148, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI87081985, Length=272, Percent_Identity=33.4558823529412, Blast_Score=165, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI17536757, Length=348, Percent_Identity=31.3218390804598, Blast_Score=129, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI71998419, Length=239, Percent_Identity=30.1255230125523, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI115534021, Length=239, Percent_Identity=30.1255230125523, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI25143471, Length=207, Percent_Identity=31.8840579710145, Blast_Score=91, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6324268, Length=321, Percent_Identity=32.0872274143302, Blast_Score=136, Evalue=8e-33,
Organism=Saccharomyces cerevisiae, GI6319447, Length=200, Percent_Identity=31.5, Blast_Score=93, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6324306, Length=206, Percent_Identity=29.126213592233, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI22024126, Length=329, Percent_Identity=32.2188449848024, Blast_Score=131, Evalue=8e-31,
Organism=Drosophila melanogaster, GI24668781, Length=235, Percent_Identity=27.6595744680851, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21356513, Length=235, Percent_Identity=27.6595744680851, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI21355201, Length=186, Percent_Identity=32.7956989247312, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21356579, Length=188, Percent_Identity=29.2553191489362, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI19920494, Length=180, Percent_Identity=30, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 51364; Mature: 51364

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPREIAYKILQEVLSKEAYANISFNKHLKGQELKEIDRGFTKELVFGVIERKYTLDFIL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SFFVNKAPDLKTMIFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRN
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYR
CCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEE
VNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIDIKNPESHQLYKEGFIYIQDEASMLV
EEEEEEEHHHHHHHHCCCCCEEECCCEEEEEEEEEECCCCHHHHHHCCCEEEECHHHHHH
SKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITN
HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCC
VKTEAFDSTFVNKKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
LDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHPDFKLVDIKAEMPSGLNIETASL
HCCCHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCEEECCC
GYVQTTPLEHEIDGFFISKLRRIK
CCEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPREIAYKILQEVLSKEAYANISFNKHLKGQELKEIDRGFTKELVFGVIERKYTLDFIL
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SFFVNKAPDLKTMIFLEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKRANFINAVLRN
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
YDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNERPEICYR
CCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEE
VNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIDIKNPESHQLYKEGFIYIQDEASMLV
EEEEEEEHHHHHHHHCCCCCEEECCCEEEEEEEEEECCCCHHHHHHCCCEEEECHHHHHH
SKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENCKRLGITN
HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCC
VKTEAFDSTFVNKKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISELIETQYKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
LDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHPDFKLVDIKAEMPSGLNIETASL
HCCCHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCEEECCC
GYVQTTPLEHEIDGFFISKLRRIK
CCEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]