Click here to switch to the map view.

The map label for this gene is ybdL [C]

Identifier: 167040258

GI number: 167040258

Start: 1638750

End: 1639937

Strand: Reverse

Name: ybdL [C]

Synonym: Teth514_1621

Alternate gene names: 167040258

Gene position: 1639937-1638750 (Counterclockwise)

Preceding gene: 167040259

Following gene: 167040257

Centisome position: 66.74

GC content: 32.91

Gene sequence:

>1188_bases
TTGGATTTATCCCAAAATGCCTTACAAATTACCCCTTCTATGACATTAGAAATAACAGCAAAGGCAAAACAGCTAAAAGC
TCAAGGCGTAGACGTTATAGACTTCGGAGTAGGAGAGCCAGATTTTGATACATCTGATTACATAAAAGAAGCTGCAATTG
ACGCTATAAAAAAAGGCTACACCAAATACACCCCTTCTTCGGGCATTTCTGAATTAAAAAAAGCAGTATGCAACAAGCTT
TTAAAAGATAACAGCCTTAAATACCAACCAGAACAAATTGTCATATCAAACGGTGCTAAACACTCTATATATAACGCTCT
TTGTGCAATTTTAAATCCTGGCGACGAAGTTATAATTCCTGTACCTTATTGGTTAAGCTATCCTGAGATGGTAAGGCTGG
CTTATGGAAAGCCTGTCTTTGTAAAAACAAAAGCAGAAAATGACTTTAAAATTACAGCCGAAGAATTAAAAAATGCTATT
ACCTCTAAGACAAAAGCTTTAATTTTAAATACCCCCAACAATCCAACTGGCTCAGTGTATACTAAAGAAGAGTTAGAAGA
ACTTGCAAAAATTATTGAAGAAGCAAATATTTTTGTCATTTCAGATGAAATATACGAAAAATTAATTTATGAAGGCAGTC
ACATCAGTATCGCCTCTTTAAATGAAAAAATTAAAGAACTGACAATTTTAGTAAACGGTATGTCTAAAGCTTATGCTATG
ACAGGATGGAGAATTGGATATACTGCTTCTTCTTTAGAAATTGCAAAGGTTATGTCAAACATTCAAAGTCACACCACCTC
AAATCCCAATTCAATTGCTCAATATGCCAGTGTAGCCGCTTTATCAGGAGATGAAACTGTTATTAAAAGAATGGCAGAAG
AATTCAATAAAAGAAGAATTTATATGGTTGAAAGGATAAATAAAATAAAGGGGTTAAAATCAAATAAACCTCAAGGGGCT
TTCTATGTAATGGTAAATATAGACGAATACATTGGAAAAGAAATAAAAGGAAAAATTATTAGAGGTTCCATAGATTTTGC
AAATGCTTTAATTGAAGGAGCAAATGTAGCAGTTGTTCCTGCTTTGCCCTTCGGAATGGACAATTACATTAGGATTTCTT
ATGCTACTTCCATTGAAAATATTGAAAAAGGCTTAAATAGAATCGAAGAATTTTTAAATAAAGCATAA

Upstream 100 bases:

>100_bases
ATATTGAAAAGTAAAGCTAAAAATTTTGTAGAAATATCAAAATAATTAAGTTAAAATAATATTGTGATTCATATAACGAA
ATCCTCTGGAGGTGTAAAAA

Downstream 100 bases:

>100_bases
TGAGGAGGTAAATATGCGAGATACTTATCAGAATCCGTTAATAACAAGATATGCTAGCAAAGAAATGGCCCAAATCTTCT
CTGACGACGAAAAATTTAAA

Product: aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MDLSQNALQITPSMTLEITAKAKQLKAQGVDVIDFGVGEPDFDTSDYIKEAAIDAIKKGYTKYTPSSGISELKKAVCNKL
LKDNSLKYQPEQIVISNGAKHSIYNALCAILNPGDEVIIPVPYWLSYPEMVRLAYGKPVFVKTKAENDFKITAEELKNAI
TSKTKALILNTPNNPTGSVYTKEELEELAKIIEEANIFVISDEIYEKLIYEGSHISIASLNEKIKELTILVNGMSKAYAM
TGWRIGYTASSLEIAKVMSNIQSHTTSNPNSIAQYASVAALSGDETVIKRMAEEFNKRRIYMVERINKIKGLKSNKPQGA
FYVMVNIDEYIGKEIKGKIIRGSIDFANALIEGANVAVVPALPFGMDNYIRISYATSIENIEKGLNRIEEFLNKA

Sequences:

>Translated_395_residues
MDLSQNALQITPSMTLEITAKAKQLKAQGVDVIDFGVGEPDFDTSDYIKEAAIDAIKKGYTKYTPSSGISELKKAVCNKL
LKDNSLKYQPEQIVISNGAKHSIYNALCAILNPGDEVIIPVPYWLSYPEMVRLAYGKPVFVKTKAENDFKITAEELKNAI
TSKTKALILNTPNNPTGSVYTKEELEELAKIIEEANIFVISDEIYEKLIYEGSHISIASLNEKIKELTILVNGMSKAYAM
TGWRIGYTASSLEIAKVMSNIQSHTTSNPNSIAQYASVAALSGDETVIKRMAEEFNKRRIYMVERINKIKGLKSNKPQGA
FYVMVNIDEYIGKEIKGKIIRGSIDFANALIEGANVAVVPALPFGMDNYIRISYATSIENIEKGLNRIEEFLNKA
>Mature_395_residues
MDLSQNALQITPSMTLEITAKAKQLKAQGVDVIDFGVGEPDFDTSDYIKEAAIDAIKKGYTKYTPSSGISELKKAVCNKL
LKDNSLKYQPEQIVISNGAKHSIYNALCAILNPGDEVIIPVPYWLSYPEMVRLAYGKPVFVKTKAENDFKITAEELKNAI
TSKTKALILNTPNNPTGSVYTKEELEELAKIIEEANIFVISDEIYEKLIYEGSHISIASLNEKIKELTILVNGMSKAYAM
TGWRIGYTASSLEIAKVMSNIQSHTTSNPNSIAQYASVAALSGDETVIKRMAEEFNKRRIYMVERINKIKGLKSNKPQGA
FYVMVNIDEYIGKEIKGKIIRGSIDFANALIEGANVAVVPALPFGMDNYIRISYATSIENIEKGLNRIEEFLNKA

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=398, Percent_Identity=27.1356783919598, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI169881279, Length=398, Percent_Identity=27.1356783919598, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI56713256, Length=321, Percent_Identity=30.2180685358255, Blast_Score=158, Evalue=9e-39,
Organism=Homo sapiens, GI56713254, Length=321, Percent_Identity=30.2180685358255, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI169881281, Length=405, Percent_Identity=24.6913580246914, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI4507369, Length=389, Percent_Identity=22.6221079691517, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI187936925, Length=332, Percent_Identity=25.9036144578313, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI14211921, Length=332, Percent_Identity=25.9036144578313, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI149944424, Length=320, Percent_Identity=24.6875, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI1786816, Length=393, Percent_Identity=25.4452926208651, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1788627, Length=398, Percent_Identity=28.894472361809, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788722, Length=390, Percent_Identity=26.1538461538462, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787909, Length=370, Percent_Identity=21.8918918918919, Blast_Score=66, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17567663, Length=381, Percent_Identity=26.7716535433071, Blast_Score=132, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI71994472, Length=285, Percent_Identity=27.719298245614, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71994476, Length=285, Percent_Identity=27.719298245614, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17567369, Length=201, Percent_Identity=29.8507462686567, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71981209, Length=373, Percent_Identity=22.5201072386059, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71981215, Length=204, Percent_Identity=24.5098039215686, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322401, Length=399, Percent_Identity=30.5764411027569, Blast_Score=147, Evalue=2e-36,
Organism=Saccharomyces cerevisiae, GI6323118, Length=393, Percent_Identity=22.9007633587786, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6320317, Length=345, Percent_Identity=22.6086956521739, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573069, Length=359, Percent_Identity=27.8551532033426, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI24646114, Length=359, Percent_Identity=27.8551532033426, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI28573067, Length=359, Percent_Identity=27.8551532033426, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI28573065, Length=359, Percent_Identity=27.8551532033426, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI18859735, Length=384, Percent_Identity=23.6979166666667, Blast_Score=112, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 43763; Mature: 43763

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00105 AA_TRANSFER_CLASS_1 ; PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSQNALQITPSMTLEITAKAKQLKAQGVDVIDFGVGEPDFDTSDYIKEAAIDAIKKGY
CCCCCCCEEECCCEEEEEEHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC
TKYTPSSGISELKKAVCNKLLKDNSLKYQPEQIVISNGAKHSIYNALCAILNPGDEVIIP
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEE
VPYWLSYPEMVRLAYGKPVFVKTKAENDFKITAEELKNAITSKTKALILNTPNNPTGSVY
CHHHHCCHHHHHHHCCCCEEEEECCCCCCEEEHHHHHHHHHCCCEEEEEECCCCCCCCCE
TKEELEELAKIIEEANIFVISDEIYEKLIYEGSHISIASLNEKIKELTILVNGMSKAYAM
EHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCEEEHHHHHHHHHHHHEEECCHHHHEE
TGWRIGYTASSLEIAKVMSNIQSHTTSNPNSIAQYASVAALSGDETVIKRMAEEFNKRRI
CCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEE
YMVERINKIKGLKSNKPQGAFYVMVNIDEYIGKEIKGKIIRGSIDFANALIEGANVAVVP
HHHHHHHHHCCCCCCCCCCEEEEEEECHHHHCHHHCCEEEECCHHHHHHHHCCCCEEEEE
ALPFGMDNYIRISYATSIENIEKGLNRIEEFLNKA
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLSQNALQITPSMTLEITAKAKQLKAQGVDVIDFGVGEPDFDTSDYIKEAAIDAIKKGY
CCCCCCCEEECCCEEEEEEHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC
TKYTPSSGISELKKAVCNKLLKDNSLKYQPEQIVISNGAKHSIYNALCAILNPGDEVIIP
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEE
VPYWLSYPEMVRLAYGKPVFVKTKAENDFKITAEELKNAITSKTKALILNTPNNPTGSVY
CHHHHCCHHHHHHHCCCCEEEEECCCCCCEEEHHHHHHHHHCCCEEEEEECCCCCCCCCE
TKEELEELAKIIEEANIFVISDEIYEKLIYEGSHISIASLNEKIKELTILVNGMSKAYAM
EHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCEEEHHHHHHHHHHHHEEECCHHHHEE
TGWRIGYTASSLEIAKVMSNIQSHTTSNPNSIAQYASVAALSGDETVIKRMAEEFNKRRI
CCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEE
YMVERINKIKGLKSNKPQGAFYVMVNIDEYIGKEIKGKIIRGSIDFANALIEGANVAVVP
HHHHHHHHHCCCCCCCCCCEEEEEEECHHHHCHHHCCEEEECCHHHHHHHHCCCCEEEEE
ALPFGMDNYIRISYATSIENIEKGLNRIEEFLNKA
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1990006; 2155199 [H]